View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_low_51 (Length: 215)
Name: NF14142_low_51
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 29 - 196
Target Start/End: Original strand, 33755793 - 33755960
Alignment:
| Q |
29 |
ttaacagtgaaaatttataccatttcttgatttaagtgtggtagttcttaagcagggcctttatttccttcccacttcattttgtattagggcatatcat |
128 |
Q |
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| T |
33755793 |
ttaacagtgaaaatttataccatttcatgatttaagtgtggtagttcttaagcagggcctttatttccttcccacttcattttgtattagggcatatcat |
33755892 |
T |
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| Q |
129 |
gagttagcatgcctatcttattccttatatgatttaacaataatcacttaaaatatgaaacaaattaa |
196 |
Q |
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| T |
33755893 |
gagttagcatgcctatcttattccttatatgatttaacaatagtcacttaaagtatgaaacaaattaa |
33755960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 29 - 196
Target Start/End: Original strand, 33851297 - 33851464
Alignment:
| Q |
29 |
ttaacagtgaaaatttataccatttcttgatttaagtgtggtagttcttaagcagggcctttatttccttcccacttcattttgtattagggcatatcat |
128 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33851297 |
ttaacagtgaaaatttataccatttcatgatttaagtgtggtagttcttaagcagggcctttatttccttcccacttcattttgtattagggcatatcat |
33851396 |
T |
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| Q |
129 |
gagttagcatgcctatcttattccttatatgatttaacaataatcacttaaaatatgaaacaaattaa |
196 |
Q |
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| T |
33851397 |
gagttagcatgcctatcttattccttatatgatttaacaatagtcacttaaagtatgaaacaaattaa |
33851464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 33759714 - 33759807
Alignment:
| Q |
100 |
ccacttcattttgtattagggcatatcatgagttagcatgcctatcttattccttatatgatttaacaataatcacttaaaatatgaaacaaat |
193 |
Q |
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| T |
33759714 |
ccacttcattttctattagggcataacatgaattagcaagcctatagtattccttatatgatttaacaatggtcgcttaaattatgaaacaaat |
33759807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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