View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14142_low_54 (Length: 209)
Name: NF14142_low_54
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 23438594 - 23438415
Alignment:
| Q |
18 |
aattgtctcaactaggagcatgagtaatgctaaggccatgacttttgacatttttcttatgcaagagaaagtaaaaataagctttattattgaagaaaaa |
117 |
Q |
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| T |
23438594 |
aattgtctcaactaggagcatgagtaatgctaaggccatgacttttgacatttttcttatgcaagagaaagtaaaaataagctttattattgaagaaaaa |
23438495 |
T |
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| Q |
118 |
tggatgtgagtaatgaatgtctaattcttgctttatatatagaagaaaaatgaatggacgccaaccatgattctctgctg |
197 |
Q |
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| T |
23438494 |
tggatgtgagtaatgaatgtctaattcttgctttatatatagaagaaaaatgaatggacgccaaccatgattctctgctg |
23438415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 23430529 - 23430387
Alignment:
| Q |
25 |
tcaactaggagcatgagtaatgctaaggccatgacttttgacatttttcttatgcaagagaaagtaaaaataagctttattattgaagaaaaatggatgt |
124 |
Q |
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| T |
23430529 |
tcaactaggagcatgagcagcgctaaggtcatgactttggacatttttgt-atgcaagagaaagtaataataagctttattgtagaag-aaaatggat-- |
23430434 |
T |
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| Q |
125 |
gagtaatgaatgtctaattcttgctttatatatagaagaaaaatgaatg |
173 |
Q |
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| T |
23430433 |
--ttaattaatgtatgattctcgttttatatatagatgaaaaatgaatg |
23430387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 23445273 - 23445216
Alignment:
| Q |
75 |
tatgcaagagaaagtaaaaataagctttattattgaagaaaaatggatgtgagtaatg |
132 |
Q |
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| T |
23445273 |
tatgcaagagaaagtaaaaataagttttattgtagaagaaaaattgatgagactaatg |
23445216 |
T |
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