View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14142_low_6 (Length: 567)

Name: NF14142_low_6
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14142_low_6
NF14142_low_6
[»] chr3 (1 HSPs)
chr3 (389-490)||(17376432-17376533)
[»] chr7 (3 HSPs)
chr7 (182-322)||(38637003-38637135)
chr7 (214-292)||(1843787-1843866)
chr7 (124-159)||(38636955-38636990)
[»] chr1 (4 HSPs)
chr1 (3-91)||(22119087-22119168)
chr1 (489-545)||(1538596-1538652)
chr1 (489-545)||(17768643-17768699)
chr1 (332-364)||(22119234-22119266)
[»] scaffold0181 (2 HSPs)
scaffold0181 (3-91)||(2466-2546)
scaffold0181 (332-364)||(2612-2644)
[»] chr8 (2 HSPs)
chr8 (389-433)||(15328742-15328786)
chr8 (389-433)||(15509111-15509155)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 389 - 490
Target Start/End: Complemental strand, 17376533 - 17376432
Alignment:
Q  389 ttacaccgcttaccgtatcttcaaatctacatctctgtttgttttatttcaatcgaattcgaacttctctatatactcaatttttattagttagattgtc 488  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17376533 ttacaccgcttactgtatcttcaaatctacatctctgtttgatttgtttcaatcgaattcgaacttctttatatactcaatttttattagttagattgtc 17376434  T
Q  489 at 490  Q
    ||    
T  17376433 at 17376432  T

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Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 182 - 322
Target Start/End: Original strand, 38637003 - 38637135
Alignment:
Q  182 attaacaaacaagaagcattatgaattcttattttttgaaacagttttacactgtcaagcactgaagttgttttagcttttacttgatcaacaaatcaac 281  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||        | ||||| ||||||||||||||||||||||||||||||    
T  38637003 attaacaaacaagaaacattatgaattcttattttttgaaacagttttacactg--------ttaagtttttttagcttttacttgatcaacaaatcaac 38637094  T
Q  282 ctatttacaagcatgtttgctgaagtttttggtgactaaat 322  Q
     ||||||||||  | |||| ||||| |||| ||| ||||||    
T  38637095 ttatttacaagactttttgttgaagctttttgtggctaaat 38637135  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 1843787 - 1843866
Alignment:
Q  214 tttttgaaacagttttacactgtcaagcactgaagttgtttt-agcttttacttgatcaacaaatcaacctatttacaag 292  Q
    ||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||    
T  1843787 tttttgaaacagttttacactgtcaagcactaaagttttttttagcttttacttgatcaacaaatcaacctatttacaag 1843866  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 38636955 - 38636990
Alignment:
Q  124 ttatttgttgaaatagtttgacacagtcaaacactg 159  Q
    ||||||||||||| ||||||||||||||||||||||    
T  38636955 ttatttgttgaaacagtttgacacagtcaaacactg 38636990  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 22119087 - 22119168
Alignment:
Q  3 gattgcttagtgatacaaggaacaagaaacaaatcttttttgtttcatttataaattcccttttgaaattaattagatttgtttctgaa 91  Q
    ||||||||||||| |||||||||| ||||||||| ||||||       ||||||||||||||||||||||||||| |||||||||||||    
T  22119087 gattgcttagtgaaacaaggaacatgaaacaaatatttttt-------ttataaattcccttttgaaattaattatatttgtttctgaa 22119168  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 545
Target Start/End: Complemental strand, 1538652 - 1538596
Alignment:
Q  489 atttggaaaacaatgcaccttcaagattgtttggttggcagacatctgaaacatctt 545  Q
    |||| ||| |||||| ||||||||| || |||| |||||||||||||||||||||||    
T  1538652 atttcgaagacaatgaaccttcaagtttttttgattggcagacatctgaaacatctt 1538596  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 545
Target Start/End: Complemental strand, 17768699 - 17768643
Alignment:
Q  489 atttggaaaacaatgcaccttcaagattgtttggttggcagacatctgaaacatctt 545  Q
    |||| ||| |||||| ||||||||| || |||| |||||||||||||||||||||||    
T  17768699 atttcgaagacaatgaaccttcaagtttttttgattggcagacatctgaaacatctt 17768643  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 364
Target Start/End: Original strand, 22119234 - 22119266
Alignment:
Q  332 ttcttttcaaatatcaacttgtattctaattct 364  Q
    ||||||||||||||||| |||||||||||||||    
T  22119234 ttcttttcaaatatcaatttgtattctaattct 22119266  T

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Target: scaffold0181 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 2466 - 2546
Alignment:
Q  3 gattgcttagtgatacaaggaacaagaaacaaatcttttttgtttcatttataaattcccttttgaaattaattagatttgtttctgaa 91  Q
    ||||||||||||| |||||||||| ||||||||| ||||||        |||||||||||||||||||||||||| |||||||||||||    
T  2466 gattgcttagtgaaacaaggaacatgaaacaaatatttttt--------tataaattcccttttgaaattaattatatttgtttctgaa 2546  T

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Target: scaffold0181; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 364
Target Start/End: Original strand, 2612 - 2644
Alignment:
Q  332 ttcttttcaaatatcaacttgtattctaattct 364  Q
    ||||||||||||||||| |||||||||||||||    
T  2612 ttcttttcaaatatcaagttgtattctaattct 2644  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 433
Target Start/End: Original strand, 15328742 - 15328786
Alignment:
Q  389 ttacaccgcttaccgtatcttcaaatctacatctctgtttgtttt 433  Q
    |||||||||||||||||||  ||||||||||||||| ||| ||||    
T  15328742 ttacaccgcttaccgtatcggcaaatctacatctctatttctttt 15328786  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 433
Target Start/End: Original strand, 15509111 - 15509155
Alignment:
Q  389 ttacaccgcttaccgtatcttcaaatctacatctctgtttgtttt 433  Q
    |||||||||||||||||||  ||||||||||||||| ||| ||||    
T  15509111 ttacaccgcttaccgtatcggcaaatctacatctctatttctttt 15509155  T

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