View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14142_low_7 (Length: 516)
Name: NF14142_low_7
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 229 - 505
Target Start/End: Complemental strand, 33186560 - 33186284
Alignment:
| Q |
229 |
gtttgaaataatgaattaacttcattttatgcatacccacaaaacccatttccacaaggatcaccatttgaacactccttcttacacttgccacaatgac |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33186560 |
gtttgaaataatgaattaacttcattttatgcatacccacaaaacccatttccacaaggatcaccatttgaacactccttcttacacttgccacaatgac |
33186461 |
T |
|
| Q |
329 |
gaacatttgacaaaacattggtacaaactccattgcaacatctttctccttgcttgcatttgttgccacaaacattacaattgttcttgtcactcaaaac |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33186460 |
gaacatttgacaaaacattggtacaaactccattgcaacatctttctccttgcttgcatttgttgccacaaacattacaattgttcttgtcactcaaaac |
33186361 |
T |
|
| Q |
429 |
attacgacaatgtttcttgcaacaaaaaagcaaatcatttcccttgtttgctcgaactccattgcatatattcttcg |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33186360 |
attacgacaatgtttcttgcaacaaaaaagcaaatcatttcccttgtttgctcgaactccattgcatatattattcg |
33186284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 33186792 - 33186589
Alignment:
| Q |
1 |
ccaaataatatcacaggacacagatggcgagctacatacttggctttccatatggttagtgatcttcataaataaacctttatttgaccacatatatata |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33186792 |
ccaaataatatcacaggacatagatggcgagctacatacttggctttccatatggttagtgatcttcataaataaacctttatttgaccacatatatata |
33186693 |
T |
|
| Q |
101 |
atatggtattgataacactaaaaaacaaattacattttcacaaaccaatagtgtatgctatatgtgtcactatcattctcatacatttatatctcaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33186692 |
atatggtattgataacactaaaaaacaaattacattttcacaaaccaatagtgtatgctatatgtgtcactatcattctcatacatttatatctcaaaat |
33186593 |
T |
|
| Q |
201 |
tgaa |
204 |
Q |
| |
|
|||| |
|
|
| T |
33186592 |
tgaa |
33186589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University