View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14142_low_9 (Length: 507)
Name: NF14142_low_9
Description: NF14142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14142_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 16643350 - 16642874
Alignment:
| Q |
1 |
aagatttagaattaccgattttggagcacacgaattcagcggaagtggtaaccagaagaggaggtgaatgataagatgaagattcagatgttgctttatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16643350 |
aagatttagaattaccgattttggagcacacgaattcagcggaagtggtaaccagaagaggaggtgaatgataagatgaagattcagatgttgctttatt |
16643251 |
T |
|
| Q |
101 |
ttcttacttaaaatgctaaataaaaaattaaattgaagatgctgaatatcacagaagttgaaaaataacaaaattagtatttagggatg-----caatat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16643250 |
ttcttacttaaaatgctaaataaaaaattaaattgaagatgctgaatatcacagaagttgaaaaataacaaaattagtatttagggatgcaatgcaatat |
16643151 |
T |
|
| Q |
196 |
cagtttcagcgatgtttattttgtttattaattttaagtttgaagtgattcttcaaagcctttattattcttctgttctggaattttcagttttgnnnnn |
295 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16643150 |
cagtttcagccatgtttactttgtttattaattttaagtttgaagtgattcttcaaagcttttattattcttctgttctggaattttcagttttgttttt |
16643051 |
T |
|
| Q |
296 |
nncattgcttttgtcgattgccaatttcaataaagaattacagatcaattgagttgataaaaattaaacaaacccgaaagtaaatagtacattttaaaga |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16643050 |
ttcattgcttttgtcgattgccaatttcaataaagaattacagatcaattgcgttgataaaaattaaacaaacccgaaagtaaatagtacatttttcaga |
16642951 |
T |
|
| Q |
396 |
aag-nnnnnnnnncattcagagatgctgaaaatgtcatgtggggtgaactcgctcgggaaatgttgaaaataaaagt |
471 |
Q |
| |
|
||| |||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16642950 |
aagaaaaaaaaaacattcaaatatgctgaaaatgtcatttggggtgaactcgctcgggaaatgttgaaaataaaagt |
16642874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 17617711 - 17617235
Alignment:
| Q |
1 |
aagatttagaattaccgattttggagcacacgaattcagcggaagtggtaaccagaagaggaggtgaatgataagatgaagattcagatgttgctttatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17617711 |
aagatttagaattaccgattttggagcacacgaattcagcggaagtggtaaccagaagaggaggtgaatgataagatgaagattcagatgttgctttatt |
17617612 |
T |
|
| Q |
101 |
ttcttacttaaaatgctaaataaaaaattaaattgaagatgctgaatatcacagaagttgaaaaataacaaaattagtatttagggatg-----caatat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17617611 |
ttcttacttaaaatgctaaataaaaaattaaattgaagatgctgaatatcacagaagttgaaaaataacaaaattagtatttagggatgcaatgcaatat |
17617512 |
T |
|
| Q |
196 |
cagtttcagcgatgtttattttgtttattaattttaagtttgaagtgattcttcaaagcctttattattcttctgttctggaattttcagttttgnnnnn |
295 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17617511 |
cagtttcagccatgtttactttgtttattaattttaagtttgaagtgattcttcaaagcttttattattcttctgttctggaattttcagttttgttttt |
17617412 |
T |
|
| Q |
296 |
nncattgcttttgtcgattgccaatttcaataaagaattacagatcaattgagttgataaaaattaaacaaacccgaaagtaaatagtacattttaaaga |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17617411 |
ttcattgcttttgtcgattgccaatttcaataaagaattacagatcaattgcgttgataaaaattaaacaaacccgaaagtaaatagtacatttttcaga |
17617312 |
T |
|
| Q |
396 |
aag-nnnnnnnnncattcagagatgctgaaaatgtcatgtggggtgaactcgctcgggaaatgttgaaaataaaagt |
471 |
Q |
| |
|
||| |||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17617311 |
aagaaaaaaaaaacattcaaatatgctgaaaatgtcatttggggtgaactcgctcgggaaatgttgaaaataaaagt |
17617235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 17012819 - 17012759
Alignment:
| Q |
94 |
ctttattttcttacttaaaatgctaaataaaaaattaaattgaagatgctgaatatcacag |
154 |
Q |
| |
|
|||| |||||||| |||||||| |||||| ||||| ||||||||||| ||||||| |||| |
|
|
| T |
17012819 |
ctttgttttcttaattaaaatgaaaaataagaaatttaattgaagatgttgaatattacag |
17012759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University