View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14143_high_12 (Length: 347)

Name: NF14143_high_12
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14143_high_12
NF14143_high_12
[»] chr1 (1 HSPs)
chr1 (1-347)||(41545422-41545780)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 41545422 - 41545780
Alignment:
Q  1 aaaaactacacaacaaatcgtgttcttttcgcaaagacaacaaa----gctaccaccaaaaccaaatgcatgttacacttata--------tatataagt 88  Q
    |||||||||||||||| |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||        |||||||||    
T  41545422 aaaaactacacaacaattcgtgttcttttcgcaaagacaacaaacaaagctaccaccaaaaccaaatgcatgttacacttatatatatatatatataagt 41545521  T
Q  89 gcactttgtctttctaaaggaaaccaagaaagcttcctgagatggataagctttcatcaacaactagatttgaaagtgtgcattatggtattgtaaacca 188  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41545522 gtactttgtctttctaaaggaaaccaagaaagcttcctgagatggataagctttcatcaacaactagatttgaaagtgtgcattatggtattgtaaacca 41545621  T
Q  189 aatgaatttcatttggcaacaagctagggtaccccttatagttccagtgttgaaattgttggtagttttgtgtttgactatgtcagttatgctttttgtg 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41545622 aatgaatttcatttggcaacaagctagggtaccccttatagttccagtgttgaaattgttggtagttttgtgtttgactatgtcagttatgctttttgtg 41545721  T
Q  289 gagagagtttacatgggtatagtcattgtctttcataagttgtttggtcataaaccaga 347  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  41545722 gagagagtttatatgggtatagtcattgtctttcttaagttgtttggtcataaaccaga 41545780  T

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