View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14143_high_13 (Length: 341)
Name: NF14143_high_13
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14143_high_13 |
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| [»] scaffold0603 (1 HSPs) |
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| [»] scaffold1301 (1 HSPs) |
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Alignment Details
Target: scaffold0603 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 8 - 327
Target Start/End: Original strand, 5579 - 5904
Alignment:
| Q |
8 |
gtattgtcttaagcttttccaagagcgaaacgtcaagcttcgtggcctggaacttgccgatgaagtcactagaaacagtcttgtctaacagcaccttcac |
107 |
Q |
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| T |
5579 |
gtattgtcttaagcttttccaagagtgaaacgtcaagcttcatggcctggaagttgccgatgaagtcactagaaacaatcttgtttaacagcagtgacac |
5678 |
T |
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| Q |
108 |
agaagttgagagtgagcagagttgtagaaaagatttatcaaccaaatc---tttaggaggaatttgattccaatcacttttgaaaacacctaattcacct |
204 |
Q |
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| T |
5679 |
agaaattgagagtgagtagaattgtagagaagatttatcaaccaaaacagaatttgtaggagttccataccaatcacttttgaaaacatttaatttgcca |
5778 |
T |
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| Q |
205 |
acatgttctcccgaactcaagc---cttctaatttttcaattaatttttgcaatttagaattaatgaccctcctgaactcagactctactttgcagcgca |
301 |
Q |
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| T |
5779 |
acctgttctcccgaactcaatccttcttctaatctttcaattaattctcgcaatttagaattcatgacccacctgaactcaccgtctactttgcagcgca |
5878 |
T |
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| Q |
302 |
acgccttagtcttgatttcatcaaac |
327 |
Q |
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| T |
5879 |
acgcttcagtcttgatttcaccaaac |
5904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 4184463 - 4184331
Alignment:
| Q |
3 |
cataggtattgtcttaagcttttccaagagc---gaaacgtcaagcttcgtggcctggaacttgccgatgaagt---cactagaaacagtcttgtctaac |
96 |
Q |
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| T |
4184463 |
cataagtattgtcttaagcttttccaagagtagtgaaacgtcaagcttcgtggcctggaacttgccgatgaagtactcactagaaacaatcttgtctaac |
4184364 |
T |
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| Q |
97 |
agcaccttcacagaagttgagagtgagcagagt |
129 |
Q |
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| T |
4184363 |
agcaccttcacagaagttgagagtgagcagagt |
4184331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 5965059 - 5964916
Alignment:
| Q |
8 |
gtattgtcttaagcttttccaagagcgaaacgtcaagcttcgtggcctggaacttgccgatgaagtcactagaaacagtcttgtctaacagcaccttcac |
107 |
Q |
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| T |
5965059 |
gtattgtcttaagcttttccaagagtgaaacatcaagtttagtgctgtggaagttgtcgacgaactgactagaaacaatcttgtttaacaacaccttcac |
5964960 |
T |
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| Q |
108 |
agaagttgagagtgagcagagttgtagaaaagatttatcaacca |
151 |
Q |
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| T |
5964959 |
agaagctgagagtgagacgagttgtataggagattcatcaacca |
5964916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 5964882 - 5964819
Alignment:
| Q |
191 |
cacctaattcacctacatgttctcccgaactcaagccttctaatttttcaattaatttttgcaa |
254 |
Q |
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| T |
5964882 |
cacctaatttacctagctgttctccagaactccagccttcaaatttttcaattaattttcgcaa |
5964819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 5965376 - 5965344
Alignment:
| Q |
231 |
taatttttcaattaatttttgcaatttagaatt |
263 |
Q |
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| T |
5965376 |
taatctttcaattaatttttgcaatttagaatt |
5965344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 11498197 - 11498233
Alignment:
| Q |
289 |
actttgcagcgcaacgccttagtcttgatttcatcaa |
325 |
Q |
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| T |
11498197 |
actttgcagcgcaacgcctcagtgttgatttcatcaa |
11498233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 5988056 - 5988018
Alignment:
| Q |
228 |
ttctaatttttcaattaatttttgcaatttagaattaat |
266 |
Q |
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| T |
5988056 |
ttctaatctttcaattaatttttgcaatttagaattaat |
5988018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1301 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1301
Description:
Target: scaffold1301; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 514 - 566
Alignment:
| Q |
67 |
atgaagtcactagaaacagtcttgtctaacagcaccttcacagaagttgagag |
119 |
Q |
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| T |
514 |
atgaactcactagaaacaatcttgtttaacaacactttcacacaagttgagag |
566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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