View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14143_high_20 (Length: 252)
Name: NF14143_high_20
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14143_high_20 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 6887641 - 6887878
Alignment:
| Q |
15 |
gaagaacgaatccgtgaaaatcgtgaaagaatgggaaaattgggtattctcgacatttcactttccctcaagctcaaacctaaccccccaccttcacgca |
114 |
Q |
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| T |
6887641 |
gaagaacgaatccgtgaaaatcgtgaaagaatgggaaaattgggtattctcgacatttcactttccctcaagctcaaacctaaccccccaccttcacgca |
6887740 |
T |
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| Q |
115 |
gaaccccttctaacaaccctaaatccccaatttctcttaacccttctggcccatctcgccgatcttccaggttcttacatttttgccctaaaaatttaat |
214 |
Q |
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| T |
6887741 |
gaaccccttctaacaaccctaaatccccaatttctcttaacccttctggcccatctcgccgatcttccaggttcttacatttttgacctaaaaatttaat |
6887840 |
T |
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| Q |
215 |
ctttcatatgtttagctaagaaggttttaaataactgt |
252 |
Q |
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| T |
6887841 |
ctttcatatgtttagctaaaaaggttttaaataactgt |
6887878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 6858579 - 6858794
Alignment:
| Q |
15 |
gaagaacgaatccgtgaaaatcgtgaaagaatgggaaaattgggtattctcgacatttcactttccctcaagctcaaacctaaccccccaccttcacgca |
114 |
Q |
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| T |
6858579 |
gaagaaagaatccgcgaaaatcacgaaagaatgggaaaattgggtattctcgacatttcactttccctcaagctcaaacctaaccc---accttcacgca |
6858675 |
T |
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| Q |
115 |
gaaccccttctaacaaccctaaatccccaatttctcttaacccttctggcccatctcgccgatcttccaggttcttacatttttgccctaaaaatttaat |
214 |
Q |
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| T |
6858676 |
gaaccccttctaacaaccctaaatccccaatttctctcaacccttctggcccatctcgccgatcttccaggttcttccatttttgccctaaaaattcaat |
6858775 |
T |
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| Q |
215 |
ctttcatatgtttagctaa |
233 |
Q |
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| T |
6858776 |
ctttcatatgtttagctaa |
6858794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 6849188 - 6849258
Alignment:
| Q |
15 |
gaagaacgaatccgtgaaaatcgtgaaagaatgggaaaattgggtattctcgacatttcactttccctcaa |
85 |
Q |
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| T |
6849188 |
gaagaaagaatccgagaaaatcgtgaaagaatgggaaaattgggtcttttcgacatttcgctctccctcaa |
6849258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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