View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14143_high_27 (Length: 234)
Name: NF14143_high_27
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14143_high_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 27508086 - 27507916
Alignment:
| Q |
1 |
ccgccgttgccgttacctttccttccgtcaactccgacggtgagttttgaacgtgaagctgagttactaagtgagtcataactcgttggcactggtgttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27508086 |
ccgccgttgccgttacctttccttccgtcaactccaacggtgagttttgaacgtgaagctgagttactaagtgagtcataactcgttggcactggtgttt |
27507987 |
T |
|
| Q |
101 |
gtgtttctggaatctccatctcctcttcttgttcctcttgttcatcaaattccatttcactcttcaaacaa |
171 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27507986 |
gtatttctggaatctccatctcctcttcttgttcctcttgttcatcaaattccatttcactcttcaaacaa |
27507916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 26145971 - 26145808
Alignment:
| Q |
1 |
ccgccgttgccgttacctttccttccgtcaactccgacggtgagttttgaacgtgaagctgagttactaagtgagtcataactcgttggcactggtgttt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
26145971 |
ccgccgttgccattacctttccttccgtcaactacgacggtgagttttgaacgtgaagctgaattaccaagtcaatcataactcgttggcactggtgttt |
26145872 |
T |
|
| Q |
101 |
gtgtttctggaatctccatctcctcttcttgttcctcttgttcatcaaattccatttcactctt |
164 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26145871 |
gtgtttttggaatctccatctcctcttcttgttccgcttgttcatcaaattccatttcactctt |
26145808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 44748041 - 44748198
Alignment:
| Q |
5 |
cgttgccgttacctttccttccgtcaactccgacggtgagttttgaacgtgaagctgagttactaagtgagtcataactcgttggcactggtgtttgtgt |
104 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
44748041 |
cgttgccattacctttccttccgtcaactccgacggtgagttttgaacgtgaagccgagttagcaagtgagtcataacttgttggcactggtgtttatgt |
44748140 |
T |
|
| Q |
105 |
ttctggaatctccatctcctcttcttgttcctcttgttcatcaaattccatttcactcttcaaacaa |
171 |
Q |
| |
|
|||| |||||||||| || ||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44748141 |
ttctagaatctccatatcatct---------tcttgttcatcaaattccatctcactcttcaaacaa |
44748198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 30232284 - 30232121
Alignment:
| Q |
1 |
ccgccgttgccgttacctttccttccgtcaactccgacggtgagttttgaacgtgaagctgagttactaagtgagtcataactcgttggcactggtgttt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
30232284 |
ccgccgttgccattacctttccttccgtcaactacgacggtgagttttgaatgtgaagctgaattaccaagtcagtcataactcgttggcactggtgttt |
30232185 |
T |
|
| Q |
101 |
gtgtttctggaatctccatctcctcttcttgttcctcttgttcatcaaattccatttcactctt |
164 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
30232184 |
gtgtttttggaatctccatctcctcttcttgttccgcttattcatcaaattccatttcactctt |
30232121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 137451 - 137288
Alignment:
| Q |
1 |
ccgccgttgccgttacctttccttccgtcaactccgacggtgagttttgaacgtgaagctgagttactaagtgagtcataactcgttggcactggtgttt |
100 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| |||||||||||||||||| ||||| ||| |||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
137451 |
ccgccgttgccattacctttccttctgtcaactacgacggtgagttttgaacttgaagttgaattaccaagtcagtcataactcgttggcactggtgttt |
137352 |
T |
|
| Q |
101 |
gtgtttctggaatctccatctcctcttcttgttcctcttgttcatcaaattccatttcactctt |
164 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
137351 |
gtgtttttggaatctccatctcctcttcttgttccgcttattcatcaaattccatttcactctt |
137288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 171
Target Start/End: Original strand, 35192981 - 35193137
Alignment:
| Q |
6 |
gttgccgttacctttccttccgtcaactccgacggtgagttttgaacgtgaagctgagttactaagtgagtcataactcgttggcactggtgtttgtgtt |
105 |
Q |
| |
|
||||||||||||||| | |||||||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35192981 |
gttgccgttaccttttcatccgtcaacttcgacggtaagttttgaacgtgaagccgagttagcaagtgagtcataacttgttggcactggtgtttgtgtt |
35193080 |
T |
|
| Q |
106 |
tctggaatctccatctcctcttcttgttcctcttgttcatcaaattccatttcactcttcaaacaa |
171 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35193081 |
tctggaatctccatatcctct---------tcttgttcatcaaattccatctcactcttcaaacaa |
35193137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 36606564 - 36606507
Alignment:
| Q |
26 |
cgtcaactccgacggtgagttttgaacgtgaagctgagttactaagtgagtcataact |
83 |
Q |
| |
|
||||| |||||||||| ||||||||| ||||||||||||||| ||||||||| |||| |
|
|
| T |
36606564 |
cgtcagctccgacggttggttttgaacatgaagctgagttactgagtgagtcagaact |
36606507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University