View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14143_high_29 (Length: 227)

Name: NF14143_high_29
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14143_high_29
NF14143_high_29
[»] chr3 (1 HSPs)
chr3 (1-222)||(2420345-2420566)
[»] chr5 (1 HSPs)
chr5 (5-40)||(9096538-9096573)
[»] chr4 (1 HSPs)
chr4 (4-33)||(56504641-56504670)
[»] chr1 (2 HSPs)
chr1 (1-34)||(1523829-1523862)
chr1 (4-32)||(32295519-32295547)
[»] chr2 (1 HSPs)
chr2 (3-35)||(44137313-44137345)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2420566 - 2420345
Alignment:
Q  1 cattcccctctaaactcccaaacaaagcctaagacattaactacatggattgtttcaatacctaatttttatccgatatttgcctgaatctcagcattat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2420566 cattcccctctaaactcccaaacaaagcctaagacattaactacatggattgtttcaatacctaatttttatccgatatttgcctgaatctcagcattat 2420467  T
Q  101 tactatcgtatcatttgcttacttattcagtgttatcccaaagattggtcaagagaaaatgacacttaacgtagaacactaaagaaagcaacatggaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  2420466 tactatcgtatcatttgcttacttattcagtgttatcccaaagattggtcaagagaaaatgacacttaacgtagaacactaaagaaagcaagatgaaaag 2420367  T
Q  201 cctttctttatgcgacttctgt 222  Q
    ||||||||||||| ||||||||    
T  2420366 cctttctttatgctacttctgt 2420345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 9096538 - 9096573
Alignment:
Q  5 cccctctaaactcccaaacaaagcctaagacattaa 40  Q
    |||||| |||||||||||||||||||||||||||||    
T  9096538 cccctccaaactcccaaacaaagcctaagacattaa 9096573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 56504641 - 56504670
Alignment:
Q  4 tcccctctaaactcccaaacaaagcctaag 33  Q
    ||||||||||||||||||||||||||||||    
T  56504641 tcccctctaaactcccaaacaaagcctaag 56504670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1523829 - 1523862
Alignment:
Q  1 cattcccctctaaactcccaaacaaagcctaaga 34  Q
    |||||||||| |||||||||||||||||||||||    
T  1523829 cattcccctccaaactcccaaacaaagcctaaga 1523862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 32295547 - 32295519
Alignment:
Q  4 tcccctctaaactcccaaacaaagcctaa 32  Q
    |||||||||||||||||||||||||||||    
T  32295547 tcccctctaaactcccaaacaaagcctaa 32295519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 44137313 - 44137345
Alignment:
Q  3 ttcccctctaaactcccaaacaaagcctaagac 35  Q
    |||||||| ||||||||||||||||||||||||    
T  44137313 ttcccctccaaactcccaaacaaagcctaagac 44137345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University