View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14143_high_30 (Length: 227)
Name: NF14143_high_30
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14143_high_30 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 53566117 - 53566202
Alignment:
| Q |
142 |
aacctgttgaataacatattttgacagctctagtataagaaagcgacatcacactataatttgtttgaggagtgacatcatagtat |
227 |
Q |
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| T |
53566117 |
aacctgttgaataacatattttgacagctctaatataagaaagcgacatcacactataatttgtttgaggagtgacatcatagtat |
53566202 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 53565988 - 53566039
Alignment:
| Q |
45 |
ataaagcctgactcatttagcctgcagctcgtataaaattgagctcgggtag |
96 |
Q |
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| T |
53565988 |
ataaagcctgactcatttagcccgcagcccgtataaaattgagctcgggtag |
53566039 |
T |
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