View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14143_high_31 (Length: 225)

Name: NF14143_high_31
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14143_high_31
NF14143_high_31
[»] chr7 (4 HSPs)
chr7 (1-214)||(22592577-22592790)
chr7 (48-101)||(48881056-48881109)
chr7 (79-120)||(32547733-32547774)
chr7 (49-98)||(38914120-38914169)
[»] chr1 (2 HSPs)
chr1 (115-214)||(31146847-31146944)
chr1 (48-98)||(1403039-1403089)
[»] chr4 (8 HSPs)
chr4 (49-98)||(33570313-33570362)
chr4 (45-98)||(25370429-25370482)
chr4 (49-118)||(43079160-43079229)
chr4 (50-118)||(43079958-43080026)
chr4 (43-98)||(388747-388802)
chr4 (48-98)||(52597748-52597798)
chr4 (49-98)||(6862647-6862696)
chr4 (49-98)||(12639965-12640014)
[»] chr2 (5 HSPs)
chr2 (48-98)||(6849579-6849629)
chr2 (45-98)||(28223784-28223837)
chr2 (43-98)||(4769051-4769106)
chr2 (47-98)||(11256777-11256828)
chr2 (49-98)||(44829315-44829364)
[»] scaffold0229 (1 HSPs)
scaffold0229 (48-98)||(15270-15320)
[»] chr3 (2 HSPs)
chr3 (47-93)||(31168565-31168611)
chr3 (45-98)||(32672162-32672215)
[»] scaffold0039 (2 HSPs)
scaffold0039 (49-98)||(90615-90664)
scaffold0039 (57-120)||(90983-91047)
[»] chr5 (3 HSPs)
chr5 (49-98)||(4929543-4929592)
chr5 (48-100)||(25074282-25074334)
chr5 (48-100)||(25132251-25132303)


Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 22592790 - 22592577
Alignment:
Q  1 tcgagaacttctggcgatggattttgcgtgtcacaacaagacaatttaggtggcattttacattgaaaaggtcaatccttttccaccataggaaagttaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||| |||| ||||||||    
T  22592790 tcgagaacttctggcgatggattttgcgtgtcacaacaagacaatttaggtggcatttcacatggaaaaggtcaatcctcttccactatagaaaagttaa 22592691  T
Q  101 tatcatccattagatcaaatgttccaaagacacactcgttgatcactaatttcactattgcatctctagaatcaatatataaaattttgttttacctttt 200  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22592690 tatcattcattagatcaaatgttccaaagacacactcgttcatcactaatttcactattgcatctctaaaatcaatatataaaattttgttttacctttt 22592591  T
Q  201 cacttgattttcat 214  Q
    ||||||||||||||    
T  22592590 cacttgattttcat 22592577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 48881109 - 48881056
Alignment:
Q  48 aggtggcattttacattgaaaaggtcaatccttttccaccataggaaagttaat 101  Q
    |||||||||||||||| |||||||| |||||||| ||||||||||| |||||||    
T  48881109 aggtggcattttacatggaaaaggttaatcctttcccaccataggacagttaat 48881056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 32547733 - 32547774
Alignment:
Q  79 ttttccaccataggaaagttaatatcatccattagatcaaat 120  Q
    ||||||||||||||||||||||| | | ||||||||||||||    
T  32547733 ttttccaccataggaaagttaatgttagccattagatcaaat 32547774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 38914169 - 38914120
Alignment:
Q  49 ggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    ||||||||||  ||| |||||||| |||||||| ||||||||||||||||    
T  38914169 ggtggcatttaccatagaaaaggtgaatcctttcccaccataggaaagtt 38914120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 31146847 - 31146944
Alignment:
Q  115 tcaaatgttccaaagacacactcgttgatcactaatttcactattgcatctctagaatcaatatataaaattttgttttaccttttcacttgattttcat 214  Q
    |||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  31146847 tcaaatgttccaaagacac--tcgttgatcactaatttcactattgtatctctagaataaatatataaaattttgttttaccttttcacttaattttcat 31146944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 1403039 - 1403089
Alignment:
Q  48 aggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    ||||||||||| |||| |||||||| |||||||| ||||||| ||||||||    
T  1403039 aggtggcatttcacatggaaaaggttaatcctttcccaccatgggaaagtt 1403089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 33570362 - 33570313
Alignment:
Q  49 ggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    |||||||||| |||| |||||||||||||||||||||||||| |||||||    
T  33570362 ggtggcatttcacatggaaaaggtcaatccttttccaccataagaaagtt 33570313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 25370482 - 25370429
Alignment:
Q  45 tttaggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    ||||||||||||||||||| | |||||| |||||||| ||||||| ||||||||    
T  25370482 tttaggtggcattttacatgggaaaggttaatcctttcccaccatgggaaagtt 25370429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 43079160 - 43079229
Alignment:
Q  49 ggtggcattttacattgaaaaggtcaatccttttccaccataggaaagttaatatcatccattagatcaa 118  Q
    |||||||||| |||| | ||||| ||||| |||||||| || ||||||||||| | ||||||||||||||    
T  43079160 ggtggcatttcacatgggaaaggacaatctttttccacaatgggaaagttaattttatccattagatcaa 43079229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 43080026 - 43079958
Alignment:
Q  50 gtggcattttacattgaaaaggtcaatccttttccaccataggaaagttaatatcatccattagatcaa 118  Q
    ||||||||| |||| | ||||| ||||||||||| ||||| | ||||||||| |||||||| |||||||    
T  43080026 gtggcatttcacatgggaaaggacaatccttttctaccatggaaaagttaatttcatccatcagatcaa 43079958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 388747 - 388802
Alignment:
Q  43 aatttaggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    |||||||||||||||| |||| | |||||| |||||||| ||||||| ||||||||    
T  388747 aatttaggtggcatttcacatgggaaaggttaatcctttcccaccatgggaaagtt 388802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 52597798 - 52597748
Alignment:
Q  48 aggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    ||||||||||| |||| | |||||| ||||||||| |||||||||||||||    
T  52597798 aggtggcatttcacatgggaaaggttaatcctttttcaccataggaaagtt 52597748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 6862647 - 6862696
Alignment:
Q  49 ggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    |||||||||| |||| | ||||||||||| ||||| ||||||||||||||    
T  6862647 ggtggcatttcacataggaaaggtcaatctttttctaccataggaaagtt 6862696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 12639965 - 12640014
Alignment:
Q  49 ggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    |||||||||| |||| | |||||| |||||||||||||||| ||||||||    
T  12639965 ggtggcatttcacatgggaaaggttaatccttttccaccatgggaaagtt 12640014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 6849629 - 6849579
Alignment:
Q  48 aggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    |||||||||||||||| |||||||| |||||||| ||||||| ||||||||    
T  6849629 aggtggcattttacatggaaaaggttaatcctttcccaccatgggaaagtt 6849579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 28223784 - 28223837
Alignment:
Q  45 tttaggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    |||||||||||||| |||| | |||||| |||||||| ||||||||||||||||    
T  28223784 tttaggtggcatttcacatgggaaaggttaatcctttcccaccataggaaagtt 28223837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 4769106 - 4769051
Alignment:
Q  43 aatttaggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    ||||| |||||||||| |||| |||||||  |||||||| ||||||||||||||||    
T  4769106 aatttgggtggcatttaacatggaaaaggggaatcctttcccaccataggaaagtt 4769051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 11256828 - 11256777
Alignment:
Q  47 taggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    ||||||||||||||||| |||||||| |||| |||||||||||  |||||||    
T  11256828 taggtggcattttacatggaaaaggttaatcattttccaccatgagaaagtt 11256777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 44829364 - 44829315
Alignment:
Q  49 ggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    |||||||||| |||| | || ||| |||||||||||||||||||||||||    
T  44829364 ggtggcatttcacatgggaatggtgaatccttttccaccataggaaagtt 44829315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 15320 - 15270
Alignment:
Q  48 aggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    ||||||||||| |||| |||||||| |||||||| ||||||| ||||||||    
T  15320 aggtggcatttcacatggaaaaggttaatcctttcccaccatgggaaagtt 15270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 31168611 - 31168565
Alignment:
Q  47 taggtggcattttacattgaaaaggtcaatccttttccaccatagga 93  Q
    |||||| |||||||||| | |||||| ||||||||||||||||||||    
T  31168611 taggtgacattttacatgggaaaggttaatccttttccaccatagga 31168565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 32672162 - 32672215
Alignment:
Q  45 tttaggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    ||||||||||||||||||| | |||||| |||||||| ||| ||| ||||||||    
T  32672162 tttaggtggcattttacatgggaaaggttaatcctttcccaacatgggaaagtt 32672215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 90615 - 90664
Alignment:
Q  49 ggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    |||||||||| |||| | |||||| |||| ||||||||||||||||||||    
T  90615 ggtggcatttcacatgggaaaggtgaatcattttccaccataggaaagtt 90664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 91047 - 90983
Alignment:
Q  57 tttacattgaaaaggtcaatccttttccaccataggaaagttaata-tcatccattagatcaaat 120  Q
    ||||||| |||||||| |||||||| ||||||||||||| || ||| | |||| |||||||||||    
T  91047 tttacatggaaaaggtgaatcctttcccaccataggaaaatttatattgatcctttagatcaaat 90983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 4929592 - 4929543
Alignment:
Q  49 ggtggcattttacattgaaaaggtcaatccttttccaccataggaaagtt 98  Q
    |||||||||| |||| | |||||| |||||||||||||||| ||||||||    
T  4929592 ggtggcatttcacatgggaaaggttaatccttttccaccatgggaaagtt 4929543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 25074282 - 25074334
Alignment:
Q  48 aggtggcattttacattgaaaaggtcaatccttttccaccataggaaagttaa 100  Q
    ||||||||||| |||| |||| ||| |||| ||||||||||| ||||||||||    
T  25074282 aggtggcatttcacatggaaatggttaatctttttccaccatgggaaagttaa 25074334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 25132251 - 25132303
Alignment:
Q  48 aggtggcattttacattgaaaaggtcaatccttttccaccataggaaagttaa 100  Q
    ||||||||||| |||| |||| ||| |||| ||||||||||| ||||||||||    
T  25132251 aggtggcatttcacatggaaatggttaatctttttccaccatgggaaagttaa 25132303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University