View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14143_high_32 (Length: 222)
Name: NF14143_high_32
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14143_high_32 |
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| [»] scaffold0146 (1 HSPs) |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 16346389 - 16346202
Alignment:
| Q |
11 |
attatactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttctataactcatgaag |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16346389 |
attacactagtaccttcatcaaagttggtatgtgtagttaaatgttggggttcttctaatattttgcaatctcctaacctttcttctttaactcatgaag |
16346290 |
T |
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| Q |
111 |
gaaaccaagcaaatgaagaagttttttctcaacaagtagaaaacaatcatgttctttgaaaatatgattatttacctaattcacaagg |
198 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16346289 |
gaaaccaagcaaatgaagaagttttttctcaactagtagaaaacaatcatgttctttgaaaatatgattatttccctaattcacaagg |
16346202 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 20418676 - 20418492
Alignment:
| Q |
11 |
attatactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttctataactcatgaag |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20418676 |
attacactagtaccttcatcaaagttggtatgtgtagttaaatgttggggttcttctaatattttgcaatctcctaacctttcttcttcaactcatgaaa |
20418577 |
T |
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| Q |
111 |
gaaaccaagcaaatgaagaagttttttctcaacaagtagaaaacaatcatgttctttgaaaatatgattatttacctaattcaca |
195 |
Q |
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|||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
20418576 |
gaaaccaagcaaatgaagaaattttttctcaactagtaaaaaacaatcatgttctttggaaatatgattatttccctaattcaca |
20418492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 20417047 - 20417210
Alignment:
| Q |
18 |
tagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttctataactcatgaaggaaacca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| |
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| T |
20417047 |
tagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttctttaactcacgagggaaacca |
20417146 |
T |
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| Q |
118 |
agcaaatgaagaagttttttctcaacaagtagaaaacaatcatgttctttgaaaatatgattat |
181 |
Q |
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| T |
20417147 |
agaaaatggagaagttttttctcaacaagtagaaaacagtcatgttctttggaaaaatgattat |
20417210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 20416094 - 20415934
Alignment:
| Q |
21 |
taccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttctataactcatgaaggaaaccaagc |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||| |
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| T |
20416094 |
taccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttctttaactcacgagggaaagcaaga |
20415995 |
T |
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| Q |
121 |
aaatgaagaagttttttctcaacaagtagaaaacaatcatgttctttgaaaatatgattat |
181 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||| ||| |||||||| |
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| T |
20415994 |
aaatggagaagttttttctcaacaagtagaaaacagtcatgttctttggaaaaatgattat |
20415934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0146
Description:
Target: scaffold0146; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 8634 - 8754
Alignment:
| Q |
11 |
attatactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttctataactcatgaag |
110 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||||| | | |||||||| |
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| T |
8634 |
attacactagtaccttcatcaaagttggtatgtgtagttaattgttggaattcttctgatatttttaaatctcctaacctttcttctttgagtcatgaag |
8733 |
T |
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| Q |
111 |
gaaaccaagcaaatgaagaag |
131 |
Q |
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| T |
8734 |
ggaaccacgtgaatgaagaag |
8754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 34348 - 34454
Alignment:
| Q |
11 |
attatactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttctaatattttgcaatctcctaacctttcttctataactcatgaag |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||||| | | |||||||| |
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| T |
34348 |
attacactagtaccttcatcaaagttggtatgtgtagttaattgttggaattcttctgatatttttaaatctcctaacctttcttctttgagtcatgaag |
34447 |
T |
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| Q |
111 |
gaaacca |
117 |
Q |
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| T |
34448 |
ggaacca |
34454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 29950866 - 29950995
Alignment:
| Q |
18 |
tagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttct---aatattttgcaatctcctaacctttcttctataactcatgaaggaaa |
114 |
Q |
| |
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|||||||||| || |||||||| ||||| |||||||||||||||||||| |||||| | |||| |||||| |||||| || |||||||||||| |
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| T |
29950866 |
tagtaccttcttctaagttggtttgtgtttttaaatgttgggattcttcttctaatattattcaattgcctaacatttctt---tatgtcatgaaggaaa |
29950962 |
T |
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| Q |
115 |
ccaagcaaatgaagaagttttttctcaacaagt |
147 |
Q |
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| ||| ||||||||| ||||||||||||||| |
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| T |
29950963 |
caaagagaatgaagaaactttttctcaacaagt |
29950995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 15018689 - 15018556
Alignment:
| Q |
11 |
attatactagtaccttcatcaaagttggtatgtgtagttaaatgttgggattcttct---aatattttgcaatctcctaacctttcttctataactcatg |
107 |
Q |
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|||| |||||||||||| || |||||||| ||||| |||||||||||||||||||| |||||| | |||| |||||| |||||| || ||||| |
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| T |
15018689 |
attacactagtaccttcttctaagttggtttgtgtttttaaatgttgggattcttcttctaatattattcaattgcctaacatttctt---tatgtcatg |
15018593 |
T |
|
| Q |
108 |
aaggaaaccaagcaaatgaagaagttttttctcaaca |
144 |
Q |
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|||||||| ||| ||||||||| |||||||||||| |
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| T |
15018592 |
aaggaaacaaagagaatgaagaaactttttctcaaca |
15018556 |
T |
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