View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14143_high_33 (Length: 211)

Name: NF14143_high_33
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14143_high_33
NF14143_high_33
[»] chr1 (10 HSPs)
chr1 (18-197)||(949305-949484)
chr1 (18-197)||(960277-960456)
chr1 (18-197)||(942316-942495)
chr1 (18-197)||(971586-971765)
chr1 (43-188)||(936405-936550)
chr1 (44-193)||(909650-909799)
chr1 (43-165)||(419805-419927)
chr1 (43-165)||(975234-975356)
chr1 (45-140)||(916185-916280)
chr1 (43-140)||(924236-924333)
[»] scaffold0312 (1 HSPs)
scaffold0312 (43-165)||(10644-10766)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 949484 - 949305
Alignment:
Q  18 gttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  949484 gttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgagttttgaaatagtgaaatcaaccatagattccaatgaagt 949385  T
Q  118 tacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  949384 tacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttg 949305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 960456 - 960277
Alignment:
Q  18 gttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagt 117  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  960456 gttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagt 960357  T
Q  118 tacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  960356 tacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttg 960277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 942495 - 942316
Alignment:
Q  18 gttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagt 117  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  942495 gttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaagt 942396  T
Q  118 tacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttg 197  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  942395 tatacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttg 942316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 971765 - 971586
Alignment:
Q  18 gttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagt 117  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  971765 gttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaagt 971666  T
Q  118 tacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttcttttcacaatttcagcttcctttg 197  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  971665 tatacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttctcttcacaatttcagcttcctttg 971586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 936550 - 936405
Alignment:
Q  43 cacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg 142  Q
    ||||||||| |||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  936550 cacttctgttgaaacagcttcgacattgtttccaagtttcgaagtagtgaaatcaaccatagattccaatgatgttacacaaagcttttcctctcctttg 936451  T
Q  143 atgccatttgcttcacactcacttattgttcttttcacaatttcag 188  Q
    ||||||||| |||||||||||||||||||  | |||||||||||||    
T  936450 atgccattttcttcacactcacttattgtgttcttcacaatttcag 936405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 909799 - 909650
Alignment:
Q  44 acttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttga 143  Q
    |||||||| |||| ||  |||||||||||||| || ||| || |||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||    
T  909799 acttctgttgaaacagtgtcaacattgtttccaagcttcaaagtagtgaaatcaatcatagattccaatgatgtcacacaaagcttttcctctcctttga 909700  T
Q  144 tgccatttgcttcacactcacttattgttcttttcacaatttcagcttcc 193  Q
    | |||| ||||||||| |||||||||||  | ||||||||||||| ||||    
T  909699 taccatatgcttcacattcacttattgtgttcttcacaatttcagattcc 909650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 419805 - 419927
Alignment:
Q  43 cacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg 142  Q
    ||||||||| |||| ||| |||||||| || || ||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||    
T  419805 cacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttg 419904  T
Q  143 atgccatttgcttcacactcact 165  Q
    || || |   |||||||||||||    
T  419905 atcccttgctcttcacactcact 419927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 975356 - 975234
Alignment:
Q  43 cacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg 142  Q
    ||||||||| |||| ||| |||||||| || || ||||| ||| | ||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||    
T  975356 cacttctgttgaaacagcctcaacatttttaccaagtttagaagtcgtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttg 975257  T
Q  143 atgccatttgcttcacactcact 165  Q
    || || |   |||||||||||||    
T  975256 atcccttgctcttcacactcact 975234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 916280 - 916185
Alignment:
Q  45 cttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctt 140  Q
    ||||||| |||| |||||||||||||||||| || || ||| |||||||||||||||| ||||| ||||| |||||||||  ||||||||| ||||    
T  916280 cttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttcctctcctt 916185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 924333 - 924236
Alignment:
Q  43 cacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctt 140  Q
    ||||||||| |||| |||||||||||||||||| || || ||| |||||||||||||||| || || ||||| |||||||||  ||||||||| ||||    
T  924333 cacttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgactctaatgatgttacacaactcttttcctctcctt 924236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 10766 - 10644
Alignment:
Q  43 cacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg 142  Q
    ||||||||| |||| ||| |||||||| || || ||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||    
T  10766 cacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttg 10667  T
Q  143 atgccatttgcttcacactcact 165  Q
    || || |   |||||||||||||    
T  10666 atcccttgctcttcacactcact 10644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University