View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14143_high_4 (Length: 523)

Name: NF14143_high_4
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14143_high_4
NF14143_high_4
[»] chr4 (6 HSPs)
chr4 (289-523)||(45499720-45499951)
chr4 (114-188)||(12129711-12129785)
chr4 (114-194)||(8155819-8155899)
chr4 (120-194)||(1290143-1290217)
chr4 (146-194)||(1834202-1834250)
chr4 (114-194)||(1835041-1835121)
[»] chr8 (12 HSPs)
chr8 (114-194)||(10006426-10006506)
chr8 (114-194)||(10007702-10007782)
chr8 (120-174)||(1824023-1824077)
chr8 (120-174)||(1858468-1858522)
chr8 (126-188)||(11456697-11456759)
chr8 (114-170)||(1823659-1823715)
chr8 (114-170)||(1858104-1858160)
chr8 (131-194)||(5514063-5514126)
chr8 (115-174)||(23169931-23169990)
chr8 (146-196)||(24123869-24123919)
chr8 (115-160)||(5514219-5514265)
chr8 (146-194)||(30335721-30335769)
[»] chr7 (12 HSPs)
chr7 (114-194)||(7500536-7500616)
chr7 (126-194)||(22629568-22629636)
chr7 (114-181)||(7501791-7501858)
chr7 (115-174)||(18371526-18371585)
chr7 (114-188)||(47369869-47369943)
chr7 (126-194)||(18372408-18372476)
chr7 (114-173)||(22630391-22630450)
chr7 (114-165)||(46482708-46482759)
chr7 (114-174)||(43900428-43900488)
chr7 (149-194)||(14998062-14998107)
chr7 (146-194)||(770732-770780)
chr7 (146-194)||(32253398-32253446)
[»] chr5 (12 HSPs)
chr5 (114-194)||(18486841-18486921)
chr5 (114-188)||(19752999-19753073)
chr5 (114-194)||(18485227-18485307)
chr5 (114-194)||(25524037-25524117)
chr5 (114-174)||(2686340-2686400)
chr5 (114-188)||(19754069-19754143)
chr5 (126-194)||(25523151-25523219)
chr5 (115-194)||(22940563-22940642)
chr5 (146-194)||(42195214-42195262)
chr5 (114-181)||(24333008-24333074)
chr5 (146-178)||(2186868-2186900)
chr5 (146-194)||(42196171-42196219)
[»] chr6 (4 HSPs)
chr6 (114-194)||(7314961-7315041)
chr6 (114-188)||(7316233-7316307)
chr6 (131-179)||(17496895-17496943)
chr6 (146-194)||(1829574-1829622)
[»] chr3 (14 HSPs)
chr3 (114-194)||(47615516-47615596)
chr3 (114-174)||(12700275-12700335)
chr3 (114-194)||(34019084-34019164)
chr3 (114-194)||(47614267-47614347)
chr3 (120-170)||(8876012-8876062)
chr3 (114-188)||(11670472-11670546)
chr3 (133-181)||(11671299-11671347)
chr3 (135-194)||(52105627-52105686)
chr3 (114-188)||(12703439-12703513)
chr3 (124-160)||(17776800-17776836)
chr3 (124-160)||(19078101-19078137)
chr3 (115-194)||(7758484-7758563)
chr3 (120-181)||(19984944-19985004)
chr3 (114-154)||(8593085-8593125)
[»] chr1 (21 HSPs)
chr1 (114-189)||(39221401-39221476)
chr1 (114-194)||(36612934-36613014)
chr1 (120-174)||(43059951-43060005)
chr1 (114-188)||(50681547-50681621)
chr1 (114-194)||(37526817-37526897)
chr1 (114-194)||(50680413-50680493)
chr1 (114-193)||(25652797-25652876)
chr1 (114-194)||(36613843-36613923)
chr1 (124-194)||(51685714-51685784)
chr1 (125-174)||(39222423-39222472)
chr1 (136-193)||(43058868-43058925)
chr1 (146-196)||(43377800-43377850)
chr1 (114-194)||(35594297-35594377)
chr1 (146-194)||(35595163-35595211)
chr1 (114-181)||(39153056-39153122)
chr1 (114-160)||(23980414-23980460)
chr1 (126-155)||(7674596-7674625)
chr1 (120-181)||(39152026-39152086)
chr1 (146-199)||(40384802-40384855)
chr1 (146-194)||(51684448-51684496)
chr1 (114-170)||(52275074-52275130)
[»] chr2 (9 HSPs)
chr2 (114-194)||(22848273-22848353)
chr2 (120-174)||(13030391-13030445)
chr2 (124-191)||(21837124-21837191)
chr2 (114-174)||(18869101-18869161)
chr2 (114-174)||(18905927-18905987)
chr2 (114-194)||(28618003-28618083)
chr2 (114-194)||(18797329-18797409)
chr2 (146-181)||(11996802-11996837)
chr2 (138-186)||(18904457-18904505)
[»] scaffold0320 (1 HSPs)
scaffold0320 (120-199)||(19565-19644)
[»] scaffold1303 (1 HSPs)
scaffold1303 (146-194)||(1521-1569)
[»] scaffold0045 (1 HSPs)
scaffold0045 (146-194)||(48389-48436)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 6e-97; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 289 - 523
Target Start/End: Original strand, 45499720 - 45499951
Alignment:
Q  289 agcaaattttgaagttagaaacaaa-gttcaaacgtgacggagacttaagttaaaagtgtactgaactaactcactcccctaaattcagagcgtaaggga 387  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45499720 agcaaattttgaagttagaaacaaaagttcaaacgagacggagacttaagttaaaagtgtactgaactaactcactcccctaaattcagagcgtaaggga 45499819  T
Q  388 gggaaacgaataggtaatcaaaatcacttttcgatttgttatttcgttatcaacagcttccacgagnnnnnnngaaacgatggagtcagaaagcgacgag 487  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  45499820 gggaaacgaataggtaatcaaaatcacttttcgatttg---tttcgttatcaacagcttccacgag-aaaaaagaaacgatggagtcagaaagcgacgag 45499915  T
Q  488 accagaatcaaaagcagcaatcaacaacgtcgcgtt 523  Q
    ||||||||||||| ||||||||||||||||||||||    
T  45499916 accagaatcaaaaccagcaatcaacaacgtcgcgtt 45499951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 12129785 - 12129711
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaat 188  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||| || ||||||    
T  12129785 cacacgtggcctgccacgtaggcgttgaataagtcaaaattgatcaaaatgaccaaagatgcaaatgggctaaat 12129711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 8155899 - 8155819
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| |||||||| ||||||||||||||||||||||| |||||||| | ||| ||||||| |||| | |||||| |||||    
T  8155899 cacacgtggcctgctacgtaggcgttgaataagtcaaagttgaccaaaatgactaaagatgcaaagcggctaaatcttagg 8155819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 1290143 - 1290217
Alignment:
Q  120 tggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    |||| |||||| |||||||||| |  ||||||||||||||| ||||||||||||| ||||||  ||||| |||||    
T  1290143 tggcatgccacttaggcgttgactcggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagg 1290217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 1834250 - 1834202
Alignment:
Q  146 gtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||||||||||||| ||||||||||||| ||| || |||||| |||||    
T  1834250 gtcaaaattgaccaaaaggaccaaagatgcaaatgggctaaatcttagg 1834202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 1835041 - 1835121
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| |||| |||||  || |||||||  |||||||||||| | || ||||||||||||| |||||| |||||| |||||    
T  1835041 cacacgtggcatgccaaataagcgttgaccaagtcaaaattggctaaaaggaccaaagatgcaaaggggctaaatcttagg 1835121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 10006506 - 10006426
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| |||||    
T  10006506 cacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagg 10006426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 10007702 - 10007782
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| |||||| |||||    
T  10007702 cacacgtggcctgccacgtaggcgttgaataagtcaaaattgacgaaaaggaccaaagatgcaaaggggctaaatcttagg 10007782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 1824023 - 1824077
Alignment:
Q  120 tggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatg 174  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  1824023 tggcctaccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatg 1824077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 1858468 - 1858522
Alignment:
Q  120 tggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatg 174  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  1858468 tggcctaccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatg 1858522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 11456759 - 11456697
Alignment:
Q  126 gccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaat 188  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| ||||||    
T  11456759 gccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaatggggctaaat 11456697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 1823715 - 1823659
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaa 170  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  1823715 cacacatggcctgccacgtaggcgttgaataaatcaaaattggccaaaaggaccaaa 1823659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 1858160 - 1858104
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaa 170  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  1858160 cacacatggcctgccacgtaggcgttgaataaatcaaaattggccaaaaggaccaaa 1858104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 5514126 - 5514063
Alignment:
Q  131 gtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||    
T  5514126 gtaggcattgaataagtcaaaattgatcaaaaggaccaaagatgcaaaggggctaaattttagg 5514063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 23169931 - 23169990
Alignment:
Q  115 acacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatg 174  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||| ||||  |||||||    
T  23169931 acacatggtctgccacgtaggcattgaataagtcaaaattgaccaaaaggattaaagatg 23169990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 24123869 - 24123919
Alignment:
Q  146 gtcaaaattgaccaataggaccaaagatgtaaagggactaaattttaggag 196  Q
    ||||||||||||||| ||||||||||||| |||||| |||||| |||||||    
T  24123869 gtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttaggag 24123919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 5514219 - 5514265
Alignment:
Q  115 acacatggcctgcc-acgtaggcgttgaataagtcaaaattgaccaa 160  Q
    |||| ||||||||| |||||||| |||||||||||||||||||||||    
T  5514219 acacgtggcctgcccacgtaggcattgaataagtcaaaattgaccaa 5514265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 30335769 - 30335721
Alignment:
Q  146 gtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||||||||| ||| ||||||||||||| |||||| |||||| |||||    
T  30335769 gtcaaaattgaacaaaaggaccaaagatgcaaaggggctaaatcttagg 30335721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 7500616 - 7500536
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| |||||| |||||    
T  7500616 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggatcaaagatgcaaaggggctaaatcttagg 7500536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 22629636 - 22629568
Alignment:
Q  126 gccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| |||||    
T  22629636 gccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagg 22629568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 7501791 - 7501858
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaaggg 181  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||    
T  7501791 cacacgtggcctgccacgtaggcattgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggg 7501858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 18371585 - 18371526
Alignment:
Q  115 acacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatg 174  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  18371585 acacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggatcaaagatg 18371526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 47369943 - 47369869
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaat 188  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| |  || ||||||| |||||| ||||||    
T  47369943 cacacgtggcctgccacataggcgttgaataagtcaaaattgaccaaaataactaaagatgcaaaggggctaaat 47369869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 18372408 - 18372476
Alignment:
Q  126 gccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||||||  |||||| |||||| |||||    
T  18372408 gccacatagacgttgaataagtcaaaattgaccaaaaggaccaaagatacaaaggggctaaatcttagg 18372476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 22630391 - 22630450
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagat 173  Q
    ||||| |||||| |||| || |||||||||||||||||||||||||| ||||||||||||    
T  22630391 cacacgtggcctaccacataagcgttgaataagtcaaaattgaccaaaaggaccaaagat 22630450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 46482759 - 46482708
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaatagga 165  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  46482759 cacacatggcttgccacgtaggcattgaataagtcaaaattgaccaaaagga 46482708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 43900428 - 43900488
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatg 174  Q
    ||||||||| ||| |||||||||||||||||| | |||||||| ||| |||| ||||||||    
T  43900428 cacacatggtctgtcacgtaggcgttgaataaattaaaattgatcaaaaggatcaaagatg 43900488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 14998107 - 14998062
Alignment:
Q  149 aaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    |||||||||||| ||||||||||||| |||||| |||||| |||||    
T  14998107 aaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagg 14998062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 770732 - 770780
Alignment:
Q  146 gtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||||||||||||| | || |||||||| |||||| ||||||||||||    
T  770732 gtcaaaattgaccaaaatgatcaaagatgcaaaggggctaaattttagg 770780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 32253398 - 32253446
Alignment:
Q  146 gtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    |||||||||  |||| ||||||||||||| ||||||||||||| |||||    
T  32253398 gtcaaaatttgccaaaaggaccaaagatgcaaagggactaaatcttagg 32253446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 18486841 - 18486921
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| |||||    
T  18486841 cacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagg 18486921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 19753073 - 19752999
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaat 188  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| ||||||    
T  19753073 cacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaatggggctaaat 19752999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 18485307 - 18485227
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||| |||||| |||||    
T  18485307 cacacgtggcctgccacgtaggcgttgaataagtcaaaattaaccaaaaggatcaaagatgcaaaggggctaaatcttagg 18485227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 25524037 - 25524117
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||| |||||| |||||    
T  25524037 cacacgtggtctgccacgtaggcgttgaataagtcaaaattgaccaaaaggactaaagatgcaaaggggctaaatcttagg 25524117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 2686340 - 2686400
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatg 174  Q
    |||||||||||||  |||||||||||||||||||||||||||| ||| |||||||||||||    
T  2686340 cacacatggcctgatacgtaggcgttgaataagtcaaaattgatcaaaaggaccaaagatg 2686400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 19754069 - 19754143
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaat 188  Q
    ||||| |||||| |||||||||||||||||||||||||||||  ||| ||||||||||||| || ||| ||||||    
T  19754069 cacacgtggccttccacgtaggcgttgaataagtcaaaattgttcaaaaggaccaaagatgcaatggggctaaat 19754143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 25523219 - 25523151
Alignment:
Q  126 gccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    |||||||||||||||||||| |||||||||| ||| |||| |||||||| |||||| |||||| |||||    
T  25523219 gccacgtaggcgttgaataaatcaaaattgatcaaaaggatcaaagatgcaaaggggctaaatcttagg 25523151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 22940563 - 22940642
Alignment:
Q  115 acacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    |||| |||| |||||| |||||||||| |  ||||||||||||||| ||||  ||||||| |||||| ||||||||||||    
T  22940563 acacgtggcatgccacttaggcgttgacttggtcaaaattgaccaaaaggataaaagatgaaaaggggctaaattttagg 22940642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 42195262 - 42195214
Alignment:
Q  146 gtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||||||||||||| ||||||||||||| |||||| |||||| |||||    
T  42195262 gtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagg 42195214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 24333074 - 24333008
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaaggg 181  Q
    ||||| |||| |||||||||||| |||| |  ||||||||||||||| ||||||||||||| ||||||    
T  24333074 cacacgtggcatgccacgtaggcattgactg-gtcaaaattgaccaaaaggaccaaagatgcaaaggg 24333008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 2186900 - 2186868
Alignment:
Q  146 gtcaaaattgaccaataggaccaaagatgtaaa 178  Q
    ||||||||||||||| |||||||||||||||||    
T  2186900 gtcaaaattgaccaaaaggaccaaagatgtaaa 2186868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 42196171 - 42196219
Alignment:
Q  146 gtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||||||||||||| ||||||||||||| ||| || |||||| |||||    
T  42196171 gtcaaaattgaccaaaaggaccaaagatgcaaatgggctaaatcttagg 42196219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 7315041 - 7314961
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||| |||||| |||||    
T  7315041 cacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaatgaccaaagatgcaaaggggctaaatcttagg 7314961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 7316233 - 7316307
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaat 188  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||||    
T  7316233 cacacgtggcttgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccatagatgcaaaggggctaaat 7316307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 17496943 - 17496895
Alignment:
Q  131 gtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaag 179  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| ||||    
T  17496943 gtaggcgttgaataagtcaaaattgatcaaaaggaccaaagatgcaaag 17496895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 1829574 - 1829622
Alignment:
Q  146 gtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||||||||||||| | ||||||||||| |||||| |||||| |||||    
T  1829574 gtcaaaattgaccaaaatgaccaaagatgcaaaggggctaaatcttagg 1829622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 47615516 - 47615596
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| |||||| |||||    
T  47615516 cacacgtggcctgccacgtaggcattgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagg 47615596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 12700335 - 12700275
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatg 174  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12700335 cacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatg 12700275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 34019084 - 34019164
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| ||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| ||| |  ||||||||||||    
T  34019084 cacacgtggcctgtcacgtaggcgttgaataaatcaaaattgaccaaaaggaccaaagatgcaaatgagctaaattttagg 34019164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 47614347 - 47614267
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||| |||| | |||||| |||||    
T  47614347 cacacgtggcctgccacgtaggcgttgaataagtcaaaattaaccaaaagcaccaaagatgcaaagaggctaaatcttagg 47614267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 8876062 - 8876012
Alignment:
Q  120 tggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaa 170  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||    
T  8876062 tggcctgccacgtaggcgttgaataagtcaaaattgactaaaaggaccaaa 8876012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 11670546 - 11670472
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaat 188  Q
    ||||| |||||||||||||| |||||||||||||||||||||| ||| ||||| ||| ||| || ||||||||||    
T  11670546 cacacgtggcctgccacgtaagcgttgaataagtcaaaattgatcaaaaggacaaaaaatgcaatgggactaaat 11670472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 11671299 - 11671347
Alignment:
Q  133 aggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaaggg 181  Q
    ||||||||||||| |||||||||| ||| ||||||||||||||||||||    
T  11671299 aggcgttgaataaatcaaaattgatcaaaaggaccaaagatgtaaaggg 11671347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 52105627 - 52105686
Alignment:
Q  135 gcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    |||||||  |||||||||||| |||| |||||||||||||||||| | ||||||||||||    
T  52105627 gcgttgaccaagtcaaaattggccaaaaggaccaaagatgtaaagaggctaaattttagg 52105686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 12703439 - 12703513
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaat 188  Q
    ||||| ||| |||||||||||||||||||||||||||||||   ||| | ||||||||||| || ||| ||||||    
T  12703439 cacacgtggtctgccacgtaggcgttgaataagtcaaaattattcaaaatgaccaaagatgcaatggggctaaat 12703513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 17776800 - 17776836
Alignment:
Q  124 ctgccacgtaggcgttgaataagtcaaaattgaccaa 160  Q
    ||||||| |||||||||||||||||||||||||||||    
T  17776800 ctgccacataggcgttgaataagtcaaaattgaccaa 17776836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 19078101 - 19078137
Alignment:
Q  124 ctgccacgtaggcgttgaataagtcaaaattgaccaa 160  Q
    ||||||| |||||||||||||||||||||||||||||    
T  19078101 ctgccacataggcgttgaataagtcaaaattgaccaa 19078137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 7758563 - 7758484
Alignment:
Q  115 acacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    |||| |||| |||||| || ||||||| || ||||||||||||||| ||||||||||||  ||||||  ||||| |||||    
T  7758563 acacgtggcatgccacttaagcgttgactaggtcaaaattgaccaaaaggaccaaagatacaaaggggttaaatcttagg 7758484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 19985004 - 19984944
Alignment:
Q  120 tggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaaggg 181  Q
    |||| |||||||||||| |||| |  ||||||||||||||| ||||||||||||| ||||||    
T  19985004 tggcatgccacgtaggcattgactg-gtcaaaattgaccaaaaggaccaaagatgcaaaggg 19984944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 8593085 - 8593125
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaatt 154  Q
    ||||| ||| ||||||| |||||||||||||||||||||||    
T  8593085 cacacgtggtctgccacataggcgttgaataagtcaaaatt 8593125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 39221476 - 39221401
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaatt 189  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||| |||||||    
T  39221476 cacacgtggcctgccacgtaggcgttgaattagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatt 39221401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 36613014 - 36612934
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||||| | ||||||||||| ||||||||||||| |||||    
T  36613014 cacacgtggcctgccacgtaagcgttgaataagttaaaattgaccaaaatgaccaaagatgcaaagggactaaatcttagg 36612934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 43059951 - 43060005
Alignment:
Q  120 tggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatg 174  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43059951 tggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatg 43060005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 50681547 - 50681621
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaat 188  Q
    |||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||| | ||||||    
T  50681547 cacacatggcctgccatgtaggcgttgaataaatcaaaattgatcaataggaccaaagatgcaaagaggctaaat 50681621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 37526817 - 37526897
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| |||||| |||||||||||||||||||||||||||||| ||| | ||||||||||| |||||| |||||| |||||    
T  37526817 cacacgtggcctaccacgtaggcgttgaataagtcaaaattgatcaaaaagaccaaagatgcaaaggggctaaatcttagg 37526897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 50680493 - 50680413
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||||||  ||||| |||||    
T  50680493 cacacgtggcctgctacgtaggcgttgaataagtcaaaattgaccaaaaggatcaaagatgcaaaggggttaaatcttagg 50680413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 25652876 - 25652797
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttag 193  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| ||| || |||||| ||||    
T  25652876 cacatatggcctgccacgtaggcgttgaataagtcaaaattggccaaaatgaccaaagatgcaaatgggctaaatcttag 25652797  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 36613843 - 36613923
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| |||| || |||| | |||||| |||||    
T  36613843 cacacgtggcctgccacgtaggcgttgaataagtcaaaattgatcaaaaggactaaagttgcaaagaggctaaatcttagg 36613923  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 51685714 - 51685784
Alignment:
Q  124 ctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||||||||||||||||||  || ||||||| |||| ||||||||||||| |||||| |||||| |||||    
T  51685714 ctgccacgtaggcgttgaattggttaaaattggccaaaaggaccaaagatgcaaaggggctaaatcttagg 51685784  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 39222423 - 39222472
Alignment:
Q  125 tgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatg 174  Q
    ||||||||||||||||||||||||||||||| |||| | |||||||||||    
T  39222423 tgccacgtaggcgttgaataagtcaaaattgcccaaaaagaccaaagatg 39222472  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 43058925 - 43058868
Alignment:
Q  136 cgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttag 193  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||| |||||| ||||    
T  43058925 cgttcaataagtcaaaattgaccaaaaggatcaaagatgtaaaggggctaaatcttag 43058868  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 43377850 - 43377800
Alignment:
Q  146 gtcaaaattgaccaataggaccaaagatgtaaagggactaaattttaggag 196  Q
    ||||||||||||||| |||| ||||| ||||||| ||||||||||||||||    
T  43377850 gtcaaaattgaccaaaaggatcaaaggtgtaaagagactaaattttaggag 43377800  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 35594377 - 35594297
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| |||| |||||  || |||||||  |||||||||||| | || ||||||||||||| |||||| ||||||||||||    
T  35594377 cacacgtggcatgccaaataagcgttgaccaagtcaaaattggctaaaaggaccaaagatgcaaaggggctaaattttagg 35594297  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 35595163 - 35595211
Alignment:
Q  146 gtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||||||||||||| ||||||||||||| |||||| |||||| |||||    
T  35595163 gtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagg 35595211  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 39153056 - 39153122
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaaggg 181  Q
    ||||| |||| |||||||||||| |||| |  ||||||||||||||| ||||||||||||| ||||||    
T  39153056 cacacgtggcatgccacgtaggcattgactg-gtcaaaattgaccaaaaggaccaaagatgcaaaggg 39153122  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 23980414 - 23980460
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaa 160  Q
    ||||| ||| |||| ||||||||||||||||| ||||||||||||||    
T  23980414 cacacgtggtctgctacgtaggcgttgaataattcaaaattgaccaa 23980460  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 7674625 - 7674596
Alignment:
Q  126 gccacgtaggcgttgaataagtcaaaattg 155  Q
    ||||||||||||||||||||||||||||||    
T  7674625 gccacgtaggcgttgaataagtcaaaattg 7674596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 39152086 - 39152026
Alignment:
Q  120 tggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaaggg 181  Q
    |||| |||||||||||| |||| |  ||||||||||||||| ||||||||||||| ||||||    
T  39152086 tggcatgccacgtaggcattgactg-gtcaaaattgaccaaaaggaccaaagatgcaaaggg 39152026  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 40384855 - 40384802
Alignment:
Q  146 gtcaaaattgaccaataggaccaaagatgtaaagggactaaattttaggagatc 199  Q
    |||||||||| |||| ||||||||||||| |||| | |||||||||||| ||||    
T  40384855 gtcaaaattggccaaaaggaccaaagatgcaaagaggctaaattttaggggatc 40384802  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 51684496 - 51684448
Alignment:
Q  146 gtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    |||||||||| |||| ||||||||||||| |||||| |||||| |||||    
T  51684496 gtcaaaattggccaaaaggaccaaagatgcaaaggggctaaatcttagg 51684448  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 52275130 - 52275074
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaa 170  Q
    ||||| |||| ||||||| ||||||||| || ||||||||||||||| |||| ||||    
T  52275130 cacacttggcatgccacgcaggcgttgactatgtcaaaattgaccaaaaggatcaaa 52275074  T

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Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 22848353 - 22848273
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| |||| |||||||||||||||||||||||||||||||| ||| |||||||||| || |||||| |||||| |||||    
T  22848353 cacacgtggcttgccacgtaggcgttgaataagtcaaaattgatcaaaaggaccaaagctgcaaaggggctaaatcttagg 22848273  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 13030445 - 13030391
Alignment:
Q  120 tggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatg 174  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  13030445 tggcctgccacgtaggcgttgaataagtcaaaattgaccaaaatgaccaaagatg 13030391  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 21837191 - 21837124
Alignment:
Q  124 ctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaatttt 191  Q
    |||||| |||||||||||||||||||||||||| ||| | ||||||||||| |||||| |||||||||    
T  21837191 ctgccatgtaggcgttgaataagtcaaaattgatcaaaatgaccaaagatgcaaaggggctaaatttt 21837124  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 18869101 - 18869161
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatg 174  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| ||| | |||||||||||    
T  18869101 cacacgtggcctgccacataggcgttgaataagtcaaaattgatcaaaaagaccaaagatg 18869161  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 18905927 - 18905987
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatg 174  Q
    ||||| ||| ||||||||||||||||||||||||||||||||| ||| | |||||||||||    
T  18905927 cacacgtggtctgccacgtaggcgttgaataagtcaaaattgatcaaaaagaccaaagatg 18905987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 28618083 - 28618003
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| ||| ||||||||||||| |||||| ||||||||| |||||| |  |||||||||| |||||| |||||| |||||    
T  28618083 cacacgtggtctgccacgtaggcattgaattagtcaaaatagaccaaaataaccaaagatgcaaaggggctaaatcttagg 28618003  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 18797409 - 18797329
Alignment:
Q  114 cacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||| |||| |||||  || |||||||  |||||||||||| | || ||||||||||||| |||||| ||||||||||||    
T  18797409 cacacgtggcatgccaaataagcgttgaccaagtcaaaattggctaaaaggaccaaagatgcaaaggggctaaattttagg 18797329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 11996837 - 11996802
Alignment:
Q  146 gtcaaaattgaccaataggaccaaagatgtaaaggg 181  Q
    ||||||||||||||| ||||||||||||||||||||    
T  11996837 gtcaaaattgaccaaaaggaccaaagatgtaaaggg 11996802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 18904505 - 18904457
Alignment:
Q  138 ttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaa 186  Q
    |||| ||||| ||||||| |||| |||||||||||||||||||| ||||    
T  18904505 ttgactaagttaaaattggccaaaaggaccaaagatgtaaaggggctaa 18904457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 19644 - 19565
Alignment:
Q  120 tggcctgccacgtaggcgttgaataagtcaaaattgaccaataggaccaaagatgtaaagggactaaattttaggagatc 199  Q
    ||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||||  ||||| ||||| ||||    
T  19644 tggcctgccacgtaggcgttgaataagtcaaaattgaccaaaatgatcaaagatgcaaaggggttaaatcttaggggatc 19565  T

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Target: scaffold1303 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 1569 - 1521
Alignment:
Q  146 gtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||||||||||||| ||||||||||||| ||| || |||||| |||||    
T  1569 gtcaaaattgaccaaaaggaccaaagatgcaaatgggctaaatcttagg 1521  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 48436 - 48389
Alignment:
Q  146 gtcaaaattgaccaataggaccaaagatgtaaagggactaaattttagg 194  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||| |||||    
T  48436 gtcaaaattgaccaa-aggaccaaagatgcaaagggaataaatcttagg 48389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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