View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14143_high_5 (Length: 507)
Name: NF14143_high_5
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14143_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 45000446 - 45000962
Alignment:
| Q |
1 |
gtcttatggtattggtattaaattaaagtatacttggagggaatagtggagcgggaaacttcttgagataaaaagtagaactttgttt-atggtcggtta |
99 |
Q |
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| T |
45000446 |
gtcttatggtattggtagtaaattaaagtatacttggagggaatagtggagcgggaaacttcttgagataaaaagtagaactttgttttatggtcggtta |
45000545 |
T |
|
| Q |
100 |
gattcttgttgtgtgctttgacaaaagttaggctagaacccaattaaaggagaaaaagaggcctcacataatcatgcatttggaaatgtatgtgtacaca |
199 |
Q |
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| T |
45000546 |
gattcttgttgtgtgctttgacaaaagttaggctagaaccaaattaaaggagaaaaagaggcctcacataatcatgcatttggaaatgtatgtgtacaca |
45000645 |
T |
|
| Q |
200 |
tattgctaatgatgaaaagtaaattaaagagtatattttttaa-------tatcattctcatgtaatt-------------tctaaagtcgagtaaaaat |
279 |
Q |
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| T |
45000646 |
tattgctaatgatgaaaagtaaattaaagagtatattttttaaaattggttatcattcacatataattttaaagatcaatctcttaagtcgagtaagact |
45000745 |
T |
|
| Q |
280 |
acaatgaacgacaaaactcttttttaagagatttaatgccgttgcattctcgtggttgaatttgaattcaagatatctgattacgctaaaagagtctgaa |
379 |
Q |
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| T |
45000746 |
ataatggacgacaaaactcttttttaagagatttgatgccgttacattctcgtggttgaatttgaattcaagatatctgattacgctaaaagagtctgaa |
45000845 |
T |
|
| Q |
380 |
tcatattgaatatgtccattttgtgcattgtttcaaaaatattgttttatatggacataggtagtatagtgaaagagtagaattttatagttgattcaag |
479 |
Q |
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| T |
45000846 |
tcatattgaatatgtccattttatgcattgtttcaaaaatattgttttatatggatataggtagtatagtgaaagagtagaattttatagttgattcaaa |
45000945 |
T |
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| Q |
480 |
attgaagaaaacctgat |
496 |
Q |
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| T |
45000946 |
attgaagaaaacctgat |
45000962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 2747140 - 2747088
Alignment:
| Q |
280 |
acaatgaacgacaaaactcttttt-taagagatttaatgccgttgcattctcg |
331 |
Q |
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| T |
2747140 |
acaatgaatgacaaaactctctttctaagagatttaatatcgttgcattctcg |
2747088 |
T |
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