View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14143_high_9 (Length: 370)
Name: NF14143_high_9
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14143_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 51487172 - 51486823
Alignment:
| Q |
1 |
agtttgcaatcagtaacctttgttttctccaatttgttaaccacatcaaacatagcatatatagtcattttcttcacctgttaccaaagaaacagcaaca |
100 |
Q |
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| T |
51487172 |
agtttgcaatcagtaacctttgttttctccaatttgttaaccacatcaagcatagcatatatagtcattttcttcacctgttaccaaagaaacagcaaca |
51487073 |
T |
|
| Q |
101 |
atcaggaaaagaatacataaatcccaaaataagcaactgttgacacggattagtttacatattactttgctattctcacgatttgtttctctattctatt |
200 |
Q |
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| T |
51487072 |
atcaggaaaagaatacataaatcccaa--taagcaactgttgacacggattagtttacatattactttgctattctcacgatttgtttctctattctatt |
51486975 |
T |
|
| Q |
201 |
aggattaagagttttgtatccttataaataccagtcgctgctcgctgatttagtgcttaattttttgtatcatcaatcataattatacaatggtctttat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51486974 |
aggattaagagttttgtatccttataaataccagtcgctgctcgctgatttagtgcttaattttttgtatcatgaatcataattatacaatggtctttat |
51486875 |
T |
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| Q |
301 |
tctttctctccgttctttatctaaaacctataactttaacataagcagtacc |
352 |
Q |
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| T |
51486874 |
tctttctctccgttctttatctaaaacccataactttaacataagcagtacc |
51486823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 30199325 - 30199411
Alignment:
| Q |
1 |
agtttgcaatcagtaacctttgttttctccaatttgttaaccacatcaaacatagcatatatagtcattttcttcacctgttaccaaa |
88 |
Q |
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| T |
30199325 |
agtttgcaattactaacctt-gctttctccaacttcttgaccaaatcaaccatagcatatataatcattttcttcaccttttaccaaa |
30199411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 51507703 - 51507607
Alignment:
| Q |
1 |
agtttgcaatcagtaacctttgttttctccaatttgttaaccacatcaaacatagcatatatagtcattttcttcacctgttaccaaagaaacagcaa |
98 |
Q |
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| T |
51507703 |
agtttgcaaccactaacctt-gctttctccaacttctccaccagttcaagcatagcatatataatcattttcttcacctttgaccaaagaagcagcaa |
51507607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 51464115 - 51464030
Alignment:
| Q |
1 |
agtttgcaatcagtaacctttgttttctccaatttgttaaccacatcaaacatagcatatatagtcattttcttcacctgttaccaa |
87 |
Q |
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| T |
51464115 |
agtttgcaatcactaacctt-gctttctctaatttttcaaccacatcaagcatagcatgtacggcaattttcttcacctggtaccaa |
51464030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 30648743 - 30648817
Alignment:
| Q |
24 |
tttctccaatttgttaaccacatcaaacatagcatatatagtcattttcttcacctgttaccaaagaaacagcaa |
98 |
Q |
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| T |
30648743 |
tttctccaatgttttaaccacataaaccatagtgtaaataatcattttcttcacctgtcaccaaagaagcagcaa |
30648817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 20865031 - 20865074
Alignment:
| Q |
40 |
accacatcaaacatagcatatatagtcattttcttcacctgtta |
83 |
Q |
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| T |
20865031 |
accacatcaagcatagcatgtataatcattttcttcacctgtta |
20865074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 27401909 - 27401835
Alignment:
| Q |
24 |
tttctccaatttgttaaccacatcaaacatagcatatatagtcattttcttcacctgttaccaaagaaacagcaa |
98 |
Q |
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||||||||| || || |||||||| | ||||| ||||| |||||||||||||||||||| |||||| |||||| |
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| T |
27401909 |
tttctccaactttttgaccacatcgatcatagtatatacgatcattttcttcacctgttacaaaagaagcagcaa |
27401835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 5179468 - 5179410
Alignment:
| Q |
40 |
accacatcaaacatagcatatatagtcattttcttcacctgttaccaaagaaacagcaa |
98 |
Q |
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|||||||||| ||||| |||||| ||||||||||||||||| ||||||||| |||||| |
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| T |
5179468 |
accacatcaaccatagtgtatataatcattttcttcacctgtcaccaaagaagcagcaa |
5179410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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