View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14143_low_1 (Length: 844)
Name: NF14143_low_1
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14143_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 169 - 830
Target Start/End: Original strand, 47312217 - 47312886
Alignment:
| Q |
169 |
atgttcacccaactcaattagtcaatcaagatgggagtttcatattctcctagagtctggtcttgaacatgatcatttttcatatattttaagggctaaa |
268 |
Q |
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| T |
47312217 |
atgttcacccaactcaattagtcaatcaagatgggagtttcatattctcctagagtctggccttgaacatgatcatttttcatatattttaagggctaaa |
47312316 |
T |
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| Q |
269 |
tcgaagatttcattcatatattttaaagacaaattttaatatttaggactaaattgaaaagatactattattaattttatggactaaactagtaataaat |
368 |
Q |
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| T |
47312317 |
tcgaagatttcattcatatattttaaagacaaattttaatatttaggactaaattgaaaagatactattatt----ttatggactaaactagtaataaat |
47312412 |
T |
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| Q |
369 |
tgaaacaaattaagcacatgtactgataggataacaaatgaggaaggaacatcaataat------------ggcttaccagaaccagcaaatgagacttc |
456 |
Q |
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| T |
47312413 |
tgaaacaaattaagcacatgtactgataggataacaaatgaggaaggaacatcaataatataaatactattggcttaccagaaccagcaaatgagacttc |
47312512 |
T |
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| Q |
457 |
caataaagaggagctgaggacaagaaggagtattgcaaatgcaagcttcatcttgatttcacagtgttgtataaattaaaagaataggggcacaatatat |
556 |
Q |
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| T |
47312513 |
caataaagaggagctgaggacaagaaggagtattgcaaatgcaagcttcatcttgatttcacagtgttgtataaattaaaagaataggggcataatatat |
47312612 |
T |
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| Q |
557 |
agagttgttatgtggtattatgggttggctgtcaccaaacaaccgaatttgaaactttagtactaggttgtgctgtggaagtgtgagccagttaaaggga |
656 |
Q |
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| T |
47312613 |
agagttgtgatgtggtattaagggttggctgtcaccaaacaaccgaatttgaaactttagtactaggttgtgctgtggaagtgtgagccagttaaaggga |
47312712 |
T |
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| Q |
657 |
tgtgatttttgtagtacctgagttaatgaaagttaggtgaatgatgttacgtgagacttcattgcttctcaagtacttcctctctttgtttaaacatgca |
756 |
Q |
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| T |
47312713 |
tgtgatttttgtagtacctgagttaatgaaagttaggtgaatgatgttacgtgagacttcattgcttctcaagtacttcctctctttgtttaaacatgca |
47312812 |
T |
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| Q |
757 |
tctagtttaatatcttcttgctttttattggctaactcactaatttaatctccctctcggtccctcttcttatt |
830 |
Q |
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| T |
47312813 |
tctagtttaatatcttcttgctttttattggctaactcactaatttaatccccctctcggtccctcttcttatt |
47312886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 47312099 - 47312233
Alignment:
| Q |
15 |
aatatcaaggcagaccaaaatgccaagttagggtttgagttgtcaaaattttgggctnnnnnnntcttcaaaaagtacaagttagttataaatatataat |
114 |
Q |
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| T |
47312099 |
aatatcaaggcagaccaaaatgccaagttagggtttgagttgtcaaaattttgggctaaaaaaatcttcaaaaagtacaagttagttataaatatataat |
47312198 |
T |
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| Q |
115 |
atgagattttagttttagatgttcacccaactcaa |
149 |
Q |
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| T |
47312199 |
atgagattttagttttagatgttcacccaactcaa |
47312233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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