View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14143_low_11 (Length: 360)

Name: NF14143_low_11
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14143_low_11
NF14143_low_11
[»] chr3 (14 HSPs)
chr3 (12-223)||(42739133-42739347)
chr3 (239-345)||(33944736-33944841)
chr3 (244-345)||(38639473-38639574)
chr3 (237-345)||(53664695-53664803)
chr3 (244-345)||(37674236-37674337)
chr3 (285-345)||(3537133-3537193)
chr3 (244-345)||(5939877-5939978)
chr3 (239-345)||(44400587-44400694)
chr3 (285-345)||(48908970-48909029)
chr3 (296-345)||(50948141-50948191)
chr3 (285-334)||(25754207-25754256)
chr3 (235-271)||(4604046-4604082)
chr3 (244-272)||(24588456-24588484)
chr3 (216-244)||(42739354-42739382)
[»] chr2 (19 HSPs)
chr2 (239-345)||(1364712-1364818)
chr2 (296-345)||(6656054-6656103)
chr2 (296-345)||(11514980-11515029)
chr2 (285-345)||(37194192-37194252)
chr2 (296-334)||(15555452-15555490)
chr2 (244-343)||(18589963-18590062)
chr2 (239-277)||(39204821-39204859)
chr2 (285-345)||(13018574-13018634)
chr2 (296-341)||(4003364-4003409)
chr2 (237-270)||(16519269-16519302)
chr2 (242-271)||(16625961-16625990)
chr2 (296-345)||(26905740-26905789)
chr2 (296-345)||(30072504-30072553)
chr2 (296-345)||(31082752-31082800)
chr2 (285-326)||(40211929-40211970)
chr2 (239-271)||(5322288-5322320)
chr2 (239-271)||(11515278-11515310)
chr2 (239-271)||(31899171-31899203)
chr2 (239-271)||(40212237-40212269)
[»] chr1 (15 HSPs)
chr1 (239-345)||(5584384-5584490)
chr1 (244-319)||(2909023-2909098)
chr1 (285-345)||(41817395-41817454)
chr1 (296-345)||(27255145-27255194)
chr1 (285-345)||(29092012-29092071)
chr1 (285-345)||(37649712-37649772)
chr1 (244-345)||(46001452-46001551)
chr1 (285-345)||(17760571-17760631)
chr1 (286-334)||(52068247-52068295)
chr1 (285-345)||(34154424-34154484)
chr1 (262-345)||(36269645-36269728)
chr1 (233-271)||(41432951-41432989)
chr1 (244-277)||(4204940-4204973)
chr1 (238-271)||(17556536-17556569)
chr1 (239-271)||(45565363-45565395)
[»] chr5 (8 HSPs)
chr5 (244-345)||(10842929-10843029)
chr5 (239-345)||(2679962-2680068)
chr5 (296-345)||(5772816-5772864)
chr5 (296-345)||(35683569-35683618)
chr5 (246-326)||(38568487-38568567)
chr5 (296-345)||(39649507-39649556)
chr5 (236-271)||(6491080-6491115)
chr5 (296-345)||(10437922-10437971)
[»] chr4 (9 HSPs)
chr4 (261-345)||(28175560-28175644)
chr4 (259-345)||(12708930-12709016)
chr4 (285-345)||(29114329-29114389)
chr4 (285-345)||(30198867-30198927)
chr4 (285-345)||(38136930-38136990)
chr4 (296-345)||(16318553-16318602)
chr4 (285-324)||(50496363-50496402)
chr4 (246-326)||(51153651-51153731)
chr4 (296-345)||(33500456-33500505)
[»] scaffold0128 (1 HSPs)
scaffold0128 (261-345)||(26280-26364)
[»] chr8 (9 HSPs)
chr8 (296-345)||(26772738-26772786)
chr8 (296-345)||(21173954-21174002)
chr8 (285-345)||(23932654-23932713)
chr8 (285-345)||(36837570-36837629)
chr8 (242-345)||(34335923-34336026)
chr8 (242-271)||(3635656-3635685)
chr8 (296-340)||(79714-79758)
chr8 (239-271)||(1839999-1840031)
chr8 (239-275)||(4873393-4873429)
[»] scaffold0136 (1 HSPs)
scaffold0136 (296-345)||(2119-2167)
[»] scaffold0031 (1 HSPs)
scaffold0031 (239-345)||(93602-93708)
[»] chr7 (10 HSPs)
chr7 (296-345)||(15749045-15749094)
chr7 (285-345)||(16805663-16805723)
chr7 (286-345)||(4058235-4058294)
chr7 (261-345)||(38505430-38505514)
chr7 (296-345)||(45940496-45940545)
chr7 (244-274)||(38137824-38137854)
chr7 (296-345)||(19791628-19791676)
chr7 (239-271)||(4058319-4058351)
chr7 (239-271)||(16805747-16805779)
chr7 (285-345)||(42253885-42253944)
[»] chr6 (5 HSPs)
chr6 (296-345)||(1567217-1567266)
chr6 (285-345)||(32719472-32719531)
chr6 (246-319)||(6671406-6671479)
chr6 (285-334)||(24875039-24875088)
chr6 (242-271)||(32719555-32719584)
[»] scaffold0053 (1 HSPs)
scaffold0053 (244-345)||(29129-29229)
[»] scaffold0248 (1 HSPs)
scaffold0248 (285-345)||(292-351)
[»] scaffold1163 (1 HSPs)
scaffold1163 (296-334)||(1994-2032)
[»] scaffold0119 (1 HSPs)
scaffold0119 (296-344)||(37057-37105)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 42739133 - 42739347
Alignment:
Q  12 atgaagaatgtagtttacctcgtgcattatttatttacatagtcacatcacac-------actatcaactatttacatttcaactttgatagttaaattt 104  Q
    |||| ||||||||||||||||||||||||||||    ||||||||||||||||       |||||||||||||||||||||| |||||||||||||||||    
T  42739133 atgaggaatgtagtttacctcgtgcattattta----catagtcacatcacacatgacacactatcaactatttacatttcagctttgatagttaaattt 42739228  T
Q  105 aaaatacaaagtcaaaaaatacgagttggttatttccaagagagtgcgtgattgagttaagatagggaatcgaatcagtggattccaaattagattgaga 204  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42739229 aaaatacaaagttaaaaaatacgagttagttatttccaagagagtgcgtgattgagttaagatagggaatcgaatcagtggattccaaattagattgaga 42739328  T
Q  205 aaaattgtggccgacccaa 223  Q
    |||||| |||||| |||||    
T  42739329 aaaattatggccgtcccaa 42739347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 239 - 345
Target Start/End: Complemental strand, 33944841 - 33944736
Alignment:
Q  239 ctaaagctttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggt 338  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||    
T  33944841 ctaaagctttgtttgcgagtttggaggggaaggcttgggaaaaaaggaataagtaagtggaagaaatagaggaaaatgggagaggagggctttggg-ggt 33944743  T
Q  339 taacttt 345  Q
    |||||||    
T  33944742 taacttt 33944736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 345
Target Start/End: Original strand, 38639473 - 38639574
Alignment:
Q  244 gctttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaact 343  Q
    ||||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||| ||||||||||||||| |  |||||| ||||||||    
T  38639473 gctttgtttgcgagtttggaggggaaggcttgggaaaaaaagaataagtaagtggaagaaatagaggaaaatgggagaggaaggttttggggggttaact 38639572  T
Q  344 tt 345  Q
    ||    
T  38639573 tt 38639574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 237 - 345
Target Start/End: Complemental strand, 53664803 - 53664695
Alignment:
Q  237 cactaaagctttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggag 336  Q
    |||||| ||||||||||||||||||||||||||||||| ||       |||| || || ||||||||||||||||||||| ||||||||||||||| | |    
T  53664803 cactaaggctttgtttgcgagtttggaggggaaggcttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgagagaggaggactttgaggg 53664704  T
Q  337 gttaacttt 345  Q
    |||||||||    
T  53664703 gttaacttt 53664695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 244 - 345
Target Start/End: Complemental strand, 37674337 - 37674236
Alignment:
Q  244 gctttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaact 343  Q
    ||||||||||||||||||||||||||||||||||       |||  || || ||||||||||| | ||||||||||||||||| ||||||| ||||||||    
T  37674337 gctttgtttgcgagtttggaggggaaggcttgggaaaaaaggaacgagcaagtggaagaaataaaggaaaatgggagaggagggctttggggggttaact 37674238  T
Q  344 tt 345  Q
    ||    
T  37674237 tt 37674236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 3537133 - 3537193
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||| ||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  3537133 gaatgagtaagtggaagaaatagaggaaaatgggaggggagggctttgggaggttaacttt 3537193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 345
Target Start/End: Complemental strand, 5939978 - 5939877
Alignment:
Q  244 gctttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaact 343  Q
    ||||||||||||||||||||||||||| ||||||       |||| || || ||||||||||||| |||||||||||| || |  |||||| ||||||||    
T  5939978 gctttgtttgcgagtttggaggggaagacttgggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggagatgaaggttttggggggttaact 5939879  T
Q  344 tt 345  Q
    ||    
T  5939878 tt 5939877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 345
Target Start/End: Original strand, 44400587 - 44400694
Alignment:
Q  239 ctaaagctttgtttgcgagtttggaggggaaggcttggg--nnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggag 336  Q
    |||| ||||||||||||||||||||||||||||||||||         |||| || || ||||||||||| | ||||||||||||||||| ||||||| |    
T  44400587 ctaaggctttgtttgcgagtttggaggggaaggcttgggaaaaaaaaggaatgagcaagtggaagaaataaaggaaaatgggagaggagggctttggg-g 44400685  T
Q  337 gttaacttt 345  Q
    |||||||||    
T  44400686 gttaacttt 44400694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 48909029 - 48908970
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||| ||||||||||||| ||||||||||||||| | ||||||| ||||||||||    
T  48909029 gaataagtaagtggaagaaatagaggaaaatgggagaggaaggctttggg-ggttaacttt 48908970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 50948141 - 50948191
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttggga-ggttaacttt 345  Q
    ||||||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  50948141 tggaagaaatagaagaaaatgggagaggagggcttttggagggttaacttt 50948191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 25754256 - 25754207
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttggg 334  Q
    |||||||||| || |||||||||| || |||||||||||||| |||||||    
T  25754256 gaataagtaagtgaaagaaatagaggataatgggagaggagggctttggg 25754207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 4604046 - 4604082
Alignment:
Q  235 gacactaaagctttgtttgcgagtttggaggggaagg 271  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  4604046 gacactaaggctttgtttgcgagttttgaggggaagg 4604082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 24588484 - 24588456
Alignment:
Q  244 gctttgtttgcgagtttggaggggaaggc 272  Q
    |||||||||||||||||||||||||||||    
T  24588484 gctttgtttgcgagtttggaggggaaggc 24588456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 42739354 - 42739382
Alignment:
Q  216 cgacccaagggtaacgaaggacactaaag 244  Q
    |||||||||||||||||||||||||||||    
T  42739354 cgacccaagggtaacgaaggacactaaag 42739382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 239 - 345
Target Start/End: Original strand, 1364712 - 1364818
Alignment:
Q  239 ctaaagctttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggt 338  Q
    |||| ||||||||||||||||||||||||||||||| ||       |||| || || ||||||||||||||||||||||||||||||| ||||||| |||    
T  1364712 ctaaggctttgtttgcgagtttggaggggaaggcttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttggggggt 1364811  T
Q  339 taacttt 345  Q
    |||||||    
T  1364812 taacttt 1364818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 6656054 - 6656103
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  6656054 tggaagaaatagaagaaaatgggagaggagggctttggggggttaacttt 6656103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 11514980 - 11515029
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||||||||    
T  11514980 tggaagaaatagaagaaaatgggagaggagagctttggggggttaacttt 11515029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 37194192 - 37194252
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||| ||||||||||||| |||||||| ||| |||| ||||||| ||||||||||    
T  37194192 gaataagtaagtggaagaaatagaggaaaatggaagacgagggctttggggggttaacttt 37194252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 15555490 - 15555452
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttggg 334  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  15555490 tggaagaaatagaagaaaatgggagaggagggctttggg 15555452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 343
Target Start/End: Original strand, 18589963 - 18590062
Alignment:
Q  244 gctttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaact 343  Q
    ||||||||||||||||||| |||||||||||||        |||| || || ||||||||||||| ||||||||||| |||||  ||||||  |||||||    
T  18589963 gctttgtttgcgagtttggcggggaaggcttggaaaaacaggaatgagcaaatggaagaaatagaggaaaatgggaggggagggttttggggtgttaact 18590062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 39204821 - 39204859
Alignment:
Q  239 ctaaagctttgtttgcgagtttggaggggaaggcttggg 277  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  39204821 ctaaggctttgtttgcgagtttggaggggaaggcttggg 39204859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 13018634 - 13018574
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||| ||||| |||||||||| || ||||||||||||||||| |||||||  |||||||||    
T  13018634 gaatgagtaagtggaagaaatggaggaaaatgggagaggagggctttggggagttaacttt 13018574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 4003364 - 4003409
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaa 341  Q
    ||||||||||||| ||||||||||| ||||| ||||||| ||||||    
T  4003364 tggaagaaatagaggaaaatgggaggggagggctttggggggttaa 4003409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 16519302 - 16519269
Alignment:
Q  237 cactaaagctttgtttgcgagtttggaggggaag 270  Q
    |||||| |||||||||||||||||||||||||||    
T  16519302 cactaaggctttgtttgcgagtttggaggggaag 16519269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 16625990 - 16625961
Alignment:
Q  242 aagctttgtttgcgagtttggaggggaagg 271  Q
    ||||||||||||||||||||||||||||||    
T  16625990 aagctttgtttgcgagtttggaggggaagg 16625961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 26905740 - 26905789
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||| | |||||||||||||||||| |||| | ||||||||||    
T  26905740 tggaagaaataaaggaaaatgggagaggaggattttgaggggttaacttt 26905789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 30072553 - 30072504
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||||| ||||||||||| ||||| ||||| | ||||||||||    
T  30072553 tggaagaaatagaggaaaatgggaggggagggctttgaggggttaacttt 30072504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 31082752 - 31082800
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||||| ||||||||||| ||||| ||||||| ||||||||||    
T  31082752 tggaagaaatagaggaaaatgggaggggagggctttggg-ggttaacttt 31082800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 40211929 - 40211970
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggagg 326  Q
    |||||| ||| ||||||||||||| |||||||||||||||||    
T  40211929 gaataattaagtggaagaaatagaggaaaatgggagaggagg 40211970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 5322320 - 5322288
Alignment:
Q  239 ctaaagctttgtttgcgagtttggaggggaagg 271  Q
    |||| ||||||||||||||||||||||||||||    
T  5322320 ctaaggctttgtttgcgagtttggaggggaagg 5322288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 11515310 - 11515278
Alignment:
Q  239 ctaaagctttgtttgcgagtttggaggggaagg 271  Q
    |||| ||||||||||||||||||||||||||||    
T  11515310 ctaaggctttgtttgcgagtttggaggggaagg 11515278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 31899171 - 31899203
Alignment:
Q  239 ctaaagctttgtttgcgagtttggaggggaagg 271  Q
    ||||||||||||||| |||||||||||||||||    
T  31899171 ctaaagctttgtttgggagtttggaggggaagg 31899203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 40212269 - 40212237
Alignment:
Q  239 ctaaagctttgtttgcgagtttggaggggaagg 271  Q
    ||||||||||||||| |||||||||||||||||    
T  40212269 ctaaagctttgtttgggagtttggaggggaagg 40212237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 239 - 345
Target Start/End: Original strand, 5584384 - 5584490
Alignment:
Q  239 ctaaagctttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggt 338  Q
    |||| ||||||||||||||||||||||||||||||| ||       |||| || || ||||||||||||||||||||||||||||||| ||||||| |||    
T  5584384 ctaaggctttgtttgcgagtttggaggggaaggcttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttggggggt 5584483  T
Q  339 taacttt 345  Q
    |||||||    
T  5584484 taacttt 5584490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 244 - 319
Target Start/End: Original strand, 2909023 - 2909098
Alignment:
Q  244 gctttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatggga 319  Q
    ||||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||| ||||||||||    
T  2909023 gctttgtttgcgagtttggaggggaaggcttgggaaaaaaggaataagtaagtggaagaaatagaggaaaatggga 2909098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 41817454 - 41817395
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  41817454 gaataagtaagtggaagaaatagaggaaaatgggagaggaggactttggg-ggttaacttt 41817395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 27255145 - 27255194
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  27255145 tggaagaaatagaggaaaatgggagaggagggctttgggaggttaacttt 27255194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 29092012 - 29092071
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  29092012 gaataagtaagtggaagaaatagaggaaaatgggagaggagggctttggg-ggttaacttt 29092071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 37649772 - 37649712
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||| ||||||||||||| ||||||||||||||||| |||||||  |||||||||    
T  37649772 gaataagtaagtggaagaaatagaggaaaatgggagaggagggctttggggtgttaacttt 37649712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 345
Target Start/End: Original strand, 46001452 - 46001551
Alignment:
Q  244 gctttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaact 343  Q
    ||||||||| ||||||||| |||||||| |||||       |||||||||| ||||||||||||| |||||||||||||||||  ||| |||||||||||    
T  46001452 gctttgtttacgagtttgg-ggggaaggtttgggaaaaaaggaataagtaagtggaagaaatagaggaaaatgggagaggagg-gttttggaggttaact 46001549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 17760631 - 17760571
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||| || ||||||||||||| ||||||||||||||||  ||||||| ||||||||||    
T  17760631 gaataagcaagtggaagaaatagaggaaaatgggagaggagagctttggggggttaacttt 17760571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 52068295 - 52068247
Alignment:
Q  286 aataagtaactggaagaaatagaagaaaatgggagaggaggactttggg 334  Q
    ||||||||| ||||||||||||| ||||||||||||||||| |||||||    
T  52068295 aataagtaaatggaagaaatagaggaaaatgggagaggagggctttggg 52068247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 34154484 - 34154424
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||| ||||||||||||| |||||||  ||| |||| ||||||| ||||||||||    
T  34154484 gaataagtaagtggaagaaatagaggaaaatgaaagatgagggctttggggggttaacttt 34154424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 345
Target Start/End: Original strand, 36269645 - 36269728
Alignment:
Q  262 gaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||||||||       |||| || || |||||||||||||  |||||||||| ||||| ||||||| ||||||||||    
T  36269645 gaggggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagagaaaaatgggaggggagggctttggggggttaacttt 36269728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 41432989 - 41432951
Alignment:
Q  233 aggacactaaagctttgtttgcgagtttggaggggaagg 271  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  41432989 aggactctaaggctttgtttgcgagtttggaggggaagg 41432951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 4204973 - 4204940
Alignment:
Q  244 gctttgtttgcgagtttggaggggaaggcttggg 277  Q
    |||||||||| |||||||||||||||||||||||    
T  4204973 gctttgtttgtgagtttggaggggaaggcttggg 4204940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 17556536 - 17556569
Alignment:
Q  238 actaaagctttgtttgcgagtttggaggggaagg 271  Q
    ||||| ||||||||||||||||||||||||||||    
T  17556536 actaaggctttgtttgcgagtttggaggggaagg 17556569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 45565395 - 45565363
Alignment:
Q  239 ctaaagctttgtttgcgagtttggaggggaagg 271  Q
    |||| ||||||||||||||||||||||||||||    
T  45565395 ctaaggctttgtttgcgagtttggaggggaagg 45565363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 345
Target Start/End: Original strand, 10842929 - 10843029
Alignment:
Q  244 gctttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaact 343  Q
    |||||||||||||||||||||| ||||||||| |       |||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  10842929 gctttgtttgcgagtttggaggagaaggcttgagaaaaaaggaataagtaagtggaagaaatagaggaaaatgggagaggagggctttggg-ggttaact 10843027  T
Q  344 tt 345  Q
    ||    
T  10843028 tt 10843029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 239 - 345
Target Start/End: Complemental strand, 2680068 - 2679962
Alignment:
Q  239 ctaaagctttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggt 338  Q
    |||||||||| ||||||||||||||||||||| |||| |       ||||||| || ||||||||||||||||||||  ||| | | ||||||||| |||    
T  2680068 ctaaagctttatttgcgagtttggaggggaagacttgagaaaaaaggaataagcaagtggaagaaatagaagaaaataagagggaatgactttggggggt 2679969  T
Q  339 taacttt 345  Q
    |||||||    
T  2679968 taacttt 2679962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 5772864 - 5772816
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  5772864 tggaagaaatagaagaaaatgggagaggagggctttggg-ggttaacttt 5772816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 35683618 - 35683569
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||||||||||    
T  35683618 tggaagaaatagaagaaaatgggagaggagggcttcggggggttaacttt 35683569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 38568567 - 38568487
Alignment:
Q  246 tttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggagg 326  Q
    ||||||||||||||||||||||||||||||||       |||| || || || |||||||||| ||||||||||| |||||    
T  38568567 tttgtttgcgagtttggaggggaaggcttgggaaaaaaggaatgagcaagtgaaagaaatagaggaaaatgggaggggagg 38568487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 39649507 - 39649556
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||| | ||||||||||||||||| ||||||| ||||||||||    
T  39649507 tggaagaaataaatgaaaatgggagaggagggctttggggggttaacttt 39649556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 6491080 - 6491115
Alignment:
Q  236 acactaaagctttgtttgcgagtttggaggggaagg 271  Q
    ||||||| ||||||||||||||||||||||||||||    
T  6491080 acactaaggctttgtttgcgagtttggaggggaagg 6491115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 10437922 - 10437971
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||||||  |||||||||| ||||| ||||||| ||||||||||    
T  10437922 tggaagaaatagagaaaaatgggaggggaggtctttggggggttaacttt 10437971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 261 - 345
Target Start/End: Complemental strand, 28175644 - 28175560
Alignment:
Q  261 ggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||||||||||       |||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  28175644 ggaggggaaggcttgggaaaaaaggaataagtaagtggaagaaatagaggaaaatgggagaggagggctttgggaggttaacttt 28175560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 259 - 345
Target Start/End: Complemental strand, 12709016 - 12708930
Alignment:
Q  259 ttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||||||||||||       |||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  12709016 ttggaggggaaggcttgggaaaaaaagaataagtaagtggaagaaatagaggaaaatgggagaggagggctttggggggttaacttt 12708930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 29114389 - 29114329
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  29114389 gaataagtaagtggaagaaatagaggaaaatgggagaggagggctttggggggttaacttt 29114329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 30198927 - 30198867
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||| ||||||||||||| |||||| |||||||||| ||||||| ||||||||||    
T  30198927 gaataagtaagtggaagaaatagaggaaaataggagaggagggctttggggggttaacttt 30198867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 38136990 - 38136930
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||| ||||||||||||| |||||||| |||||||| ||||||| ||||||||||    
T  38136990 gaataagtaagtggaagaaatagaggaaaatggaagaggagggctttggggggttaacttt 38136930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 16318553 - 16318602
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||||||||||||||||||||||| ||||  | ||||||||||    
T  16318553 tggaagaaatagaagaaaatgggagaggagggctttcaggggttaacttt 16318602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 50496402 - 50496363
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagagga 324  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  50496402 gaataagtaagtggaagaaatagaggaaaatgggagagga 50496363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 51153731 - 51153651
Alignment:
Q  246 tttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggagg 326  Q
    |||||||||||||||| ||||||||  |||||       |||| ||||| || |||||||||||||||||||||| |||||    
T  51153731 tttgtttgcgagtttgaaggggaagatttgggaaaaaaggaatgagtaagtgcaagaaatagaagaaaatgggaggggagg 51153651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 33500456 - 33500505
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||||| ||||||||||||||||| ||||| |  |||||||||    
T  33500456 tggaagaaatagaggaaaatgggagaggagggctttgaggagttaacttt 33500505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 26280 - 26364
Alignment:
Q  261 ggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||||||||||       |||||||||| ||||||||||||| ||||||||||||||||| ||||||| || |||||||    
T  26280 ggaggggaaggcttgggaaaaaaggaataagtaagtggaagaaatagaggaaaatgggagaggagggctttggggggataacttt 26364  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 26772786 - 26772738
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26772786 tggaagaaatagaagaaaatgggagaggagg-ctttgggaggttaacttt 26772738  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 21174002 - 21173954
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  21174002 tggaagaaatagaagaaaatgggagaggagggctttggg-ggttaacttt 21173954  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 23932713 - 23932654
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||| ||| ||||||||||||| ||||||| ||||||||| ||||||| ||||||||||    
T  23932713 gaataaataagtggaagaaatagaggaaaatgagagaggagggctttggg-ggttaacttt 23932654  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 36837629 - 36837570
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||| ||| ||||||||||||| |||||| |||||||||| ||||||| ||||||||||    
T  36837629 gaataaataagtggaagaaatagaggaaaataggagaggagggctttggg-ggttaacttt 36837570  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 345
Target Start/End: Original strand, 34335923 - 34336026
Alignment:
Q  242 aagctttgtttgcgagtttggaggggaaggcttg-ggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggtta 340  Q
    |||||||| ||||||||||||||||||||||||| |        |||| || || ||||||||||| | ||||||||||| ||||| ||||||| |||||    
T  34335923 aagctttgcttgcgagtttggaggggaaggcttgagaaaaaaaggaatgagcaagtggaagaaataaaggaaaatgggaggggagggctttggg-ggtta 34336021  T
Q  341 acttt 345  Q
    |||||    
T  34336022 acttt 34336026  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 3635685 - 3635656
Alignment:
Q  242 aagctttgtttgcgagtttggaggggaagg 271  Q
    ||||||||||||||||||||||||||||||    
T  3635685 aagctttgtttgcgagtttggaggggaagg 3635656  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 79758 - 79714
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggtta 340  Q
    ||||||||||||| ||||||||||| ||||| ||||||| |||||    
T  79758 tggaagaaatagaggaaaatgggaggggagggctttggggggtta 79714  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 1840031 - 1839999
Alignment:
Q  239 ctaaagctttgtttgcgagtttggaggggaagg 271  Q
    |||| ||||||||||||||||||||||||||||    
T  1840031 ctaaggctttgtttgcgagtttggaggggaagg 1839999  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 4873429 - 4873393
Alignment:
Q  239 ctaaagctttgtttgcgagtttggaggggaaggcttg 275  Q
    |||| |||||||||| |||||||||||||||||||||    
T  4873429 ctaaggctttgtttgtgagtttggaggggaaggcttg 4873393  T

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Target: scaffold0136 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 2167 - 2119
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  2167 tggaagaaatagaagaaaatgggagaggagggctttggg-ggttaacttt 2119  T

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Target: scaffold0031 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 345
Target Start/End: Complemental strand, 93708 - 93602
Alignment:
Q  239 ctaaagctttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggt 338  Q
    |||| |||||||||||||||||||||||||||| |||||       |||||||||| ||||||||||| | ||| |||  |||||||   |||||| |||    
T  93708 ctaaggctttgtttgcgagtttggaggggaaggtttgggaaaaaaggaataagtaagtggaagaaataaaggaagatgacagaggagtgttttggggggt 93609  T
Q  339 taacttt 345  Q
    |||||||    
T  93608 taacttt 93602  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 15749094 - 15749045
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||||||||    
T  15749094 tggaagaaatagaagaaaatgggagaggagagctttggggggttaacttt 15749045  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 16805723 - 16805663
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||| ||||||||| ||| ||||||||||||||||| ||||||| | ||||||||    
T  16805723 gaataagtaagtggaagaaagagaggaaaatgggagaggagggctttgggggtttaacttt 16805663  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 4058294 - 4058235
Alignment:
Q  286 aataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||| ||||||||||||| |||||||| ||| |||| ||||||| ||||||||||    
T  4058294 aataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaacttt 4058235  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 345
Target Start/End: Complemental strand, 38505514 - 38505430
Alignment:
Q  261 ggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||||||||||       |||| || || ||||||||||||| ||||||||||| ||||| ||||||| ||||||||||    
T  38505514 ggaggggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttggggggttaacttt 38505430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 45940545 - 45940496
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||||||||||||||||||| |||| |||| || ||||||||||    
T  45940545 tggaagaaatagaagaaaatgggagatgagggctttagggggttaacttt 45940496  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 274
Target Start/End: Original strand, 38137824 - 38137854
Alignment:
Q  244 gctttgtttgcgagtttggaggggaaggctt 274  Q
    |||||||||||||||||||||||||||||||    
T  38137824 gctttgtttgcgagtttggaggggaaggctt 38137854  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 19791628 - 19791676
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||||||  ||||||||| |||||||||| |||||||||||||    
T  19791628 tggaagaaatagaaacaaatgggaggggaggacttt-ggaggttaacttt 19791676  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 4058351 - 4058319
Alignment:
Q  239 ctaaagctttgtttgcgagtttggaggggaagg 271  Q
    |||| ||||||||||||||||||||||||||||    
T  4058351 ctaaggctttgtttgcgagtttggaggggaagg 4058319  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Complemental strand, 16805779 - 16805747
Alignment:
Q  239 ctaaagctttgtttgcgagtttggaggggaagg 271  Q
    |||| ||||||||||||||||||||||||||||    
T  16805779 ctaaggctttgtttgcgagtttggaggggaagg 16805747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 42253885 - 42253944
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||| ||||||||||||| ||||||| ||||||| | |||| || ||||||||||    
T  42253885 gaataagtaagtggaagaaatagaggaaaatgagagaggaaggctttagg-ggttaacttt 42253944  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 1567217 - 1567266
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||||||||    
T  1567217 tggaagaaatagaagaaaatgggagaggagagctttggggggttaacttt 1567266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 32719531 - 32719472
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    |||||||||| ||||||||||||| |||||||||| |||||| ||||||| ||||||||||    
T  32719531 gaataagtaagtggaagaaatagaggaaaatgggaaaggagggctttggg-ggttaacttt 32719472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 319
Target Start/End: Original strand, 6671406 - 6671479
Alignment:
Q  246 tttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatggga 319  Q
    ||||||||||||||||||||||||||||||||        ||| || || ||||||||||||| ||||||||||    
T  6671406 tttgtttgcgagtttggaggggaaggcttgggaaaaatgaaatgagcaagtggaagaaatagaggaaaatggga 6671479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 24875088 - 24875039
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttggg 334  Q
    ||||||| || ||||||||||| ||||||||||||| ||||| |||||||    
T  24875088 gaataagcaaatggaagaaatataagaaaatgggaggggagggctttggg 24875039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 32719584 - 32719555
Alignment:
Q  242 aagctttgtttgcgagtttggaggggaagg 271  Q
    ||||||||||||||||||||||||||||||    
T  32719584 aagctttgtttgcgagtttggaggggaagg 32719555  T

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Target: scaffold0053 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 345
Target Start/End: Original strand, 29129 - 29229
Alignment:
Q  244 gctttgtttgcgagtttggaggggaaggcttgggnnnnnnngaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaact 343  Q
    ||||||||||||||||||||||| |||| || ||       |||| || || ||||||||||||||||||||||||||| ||| ||||| | ||||||||    
T  29129 gctttgtttgcgagtttggagggaaaggtttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagagaagggctttgag-ggttaact 29227  T
Q  344 tt 345  Q
    ||    
T  29228 tt 29229  T

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Target: scaffold0248 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 351 - 292
Alignment:
Q  285 gaataagtaactggaagaaatagaagaaaatgggagaggaggactttgggaggttaacttt 345  Q
    ||||||| || ||||||||||||| ||||||||||||||||  ||||||| ||||||||||    
T  351 gaataagcaagtggaagaaatagaggaaaatgggagaggagagctttggg-ggttaacttt 292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 1994 - 2032
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttggg 334  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  1994 tggaagaaatagaagaaaatgggaggggagggctttggg 2032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 37057 - 37105
Alignment:
Q  296 tggaagaaatagaagaaaatgggagaggaggactttgggaggttaactt 344  Q
    |||||||||| || |||||||| ||| |||||||||||| |||||||||    
T  37057 tggaagaaatcgaggaaaatggaagaagaggactttggggggttaactt 37105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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