View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14143_low_12 (Length: 358)
Name: NF14143_low_12
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14143_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 23344974 - 23344649
Alignment:
| Q |
17 |
tggtcttagtttggcgtcgcatacttttcattatgtatttttatgaaagttcttgaatagatttggttttgaatttctatggttactcaagtttcataga |
116 |
Q |
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| T |
23344974 |
tggtcttagtttggcgtcgcatacttttccttatgtatttttatgaaaattattgaatagatttggttttgaatttctatggttactcaagtttcataga |
23344875 |
T |
|
| Q |
117 |
cgtagctatgtgtgatgattgcagatggtcaagaattgctagaaaactacctggaagaacagacaatgagattaagaattactggaggacacacatgaga |
216 |
Q |
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| T |
23344874 |
cgtagctatgtgtgatgattgcagatggtcaagaattgctagaaaactacctggaagaacagacaatgagattaagaattactggaggacacacatgaga |
23344775 |
T |
|
| Q |
217 |
aaaaagagggcacaagagaaaaaacacgcaacaccttcgatttcatcatcacctgatcaatcttctagttgtcaatcctcacatttctcaaatagtaacc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23344774 |
aaaaagagggcacaagagaaaaaacacgcaacaccttcgatttcatcatcacctgatcaatcttctagttgtcaatcctcacatttctcaaatagtaacc |
23344675 |
T |
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| Q |
317 |
atggtgtggattcacatgcttccaac |
342 |
Q |
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| T |
23344674 |
atggtgtggattcacatgcttccaac |
23344649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 41174716 - 41174637
Alignment:
| Q |
136 |
tgcagatggtcaagaattgctagaaaactacctggaagaacagacaatgagattaagaattactggaggacacacatgag |
215 |
Q |
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| T |
41174716 |
tgcaggtggtcacgaattgctcgcaagctacctggacgaacggataatgagatcaagaattactggagaactcacatgag |
41174637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 33695822 - 33695886
Alignment:
| Q |
138 |
cagatggtcaagaattgctagaaaactacctggaagaacagacaatgagattaagaattactgga |
202 |
Q |
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| T |
33695822 |
cagatggtcagcaattgctacacatctacctggaagaacagataatgagataaagaatttctgga |
33695886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 17118307 - 17118243
Alignment:
| Q |
142 |
tggtcaagaattgctagaaaactacctggaagaacagacaatgagattaagaattactggaggac |
206 |
Q |
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| T |
17118307 |
tggtcaacaattgcaagaagtttaccaggaagaacagacaatgaaataaagaattactggaggac |
17118243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 45594331 - 45594298
Alignment:
| Q |
161 |
aactacctggaagaacagacaatgagattaagaa |
194 |
Q |
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| T |
45594331 |
aactaccaggaagaacagacaatgagattaagaa |
45594298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 2790927 - 2790887
Alignment:
| Q |
162 |
actacctggaagaacagacaatgagattaagaattactgga |
202 |
Q |
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| T |
2790927 |
actacctggaagaacagacaatgatgtcaagaattactgga |
2790887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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