View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14143_low_15 (Length: 292)
Name: NF14143_low_15
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14143_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 18673567 - 18673421
Alignment:
| Q |
28 |
ttatttaataaaactgaaatgtgatgttgaaacaccgcgtggggagacaaggaaagttctgggttgctcaagaaacgcgcaaacaattaaacgtggccgg |
127 |
Q |
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| T |
18673567 |
ttatttagtgaaattgaaatgtgatgttgaaacaccgcgtggggagacagggaaagttctgggttgctcaagaaacgcgcaaacaattaaacgtggccgg |
18673468 |
T |
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| Q |
128 |
accacaagacattttagaacgtgcataatattaatattttttgagtc |
174 |
Q |
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| T |
18673467 |
accacaagacattttagaacgtgcataatattaatattttttgagtc |
18673421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 257
Target Start/End: Complemental strand, 18671950 - 18671855
Alignment:
| Q |
163 |
attttttgagtcgttaacgagttgttccagacactctttaaatatttctaa-gaagaaattattctataaaaagaagaatatacaatttaatagag |
257 |
Q |
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| T |
18671950 |
attttttgagtcgttaacgagtgctctcagacactctttaaacatttctaaagaataaattattctataaaaagaagaatatataatttaatagag |
18671855 |
T |
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