View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14143_low_2 (Length: 584)
Name: NF14143_low_2
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14143_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 71 - 542
Target Start/End: Original strand, 43245514 - 43245981
Alignment:
| Q |
71 |
tggtcattatatttttagcaacccttcctaactcttcgtttttactccctccgattctatttataaaagggatgtctgacttaactgaaattgacgtata |
170 |
Q |
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| T |
43245514 |
tggtcattatatttttagcaacccttcctaactcttcttttttactccctccgattctatttataaaagggatgtctgacttgactgaaattgacatata |
43245613 |
T |
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| Q |
171 |
atttataaatttttattgattcaaacatctcttatacataggacaagaaggagaatttgttactcacccaaccttttaatccgatacacactcgtggaca |
270 |
Q |
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| T |
43245614 |
atttataaatttttattgattcaaacatctct----cataggacaagaaggagaatttgttactcacccaaacttttaatctgatacacactcatggaca |
43245709 |
T |
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| Q |
271 |
tgcacctctctcatgaacaagagtaataatgttgactggagatcaaaaagcaaaatcacatcgtaaagctaaaaatcaatggtttcatattgaaatttaa |
370 |
Q |
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| T |
43245710 |
tgcacctctctcatgaacaagagtaataatgttgacaggagatcaaaaagcaaaatcacatcgtaaagctaaaaatcaatggtttcatattgaaatttaa |
43245809 |
T |
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| Q |
371 |
ttctcacatcatactccatttttttattgtttgtcnnnnnnnnnnnntcatactccattttttgtgataaaaacatcatactccttttaataccttttac |
470 |
Q |
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| T |
43245810 |
ttctcacatcatactccatttttttattgtttgtcaaaaataaaaaatcatactccattttttgtgataaaaacatcatactccttttaataccttttac |
43245909 |
T |
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| Q |
471 |
atacaccttataatattgtacatgtttactatgaaacatgtaatagttatagaaaaactgcaaatatgaagg |
542 |
Q |
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| T |
43245910 |
atacaccttataatattgtacatgtttactatgaaacatgtaatagttatagaaaaactgcaaatatgaagg |
43245981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 541
Target Start/End: Original strand, 8551125 - 8551195
Alignment:
| Q |
472 |
tacaccttataatattgtacatgtttactatgaaacatgtaatagttata-gaaaaactgcaaatatgaag |
541 |
Q |
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| T |
8551125 |
tacaccttataatattgtacatctttactaaaaaacgtgtcataattataggaaaaattgcaattatgaag |
8551195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 343
Target Start/End: Original strand, 39867053 - 39867130
Alignment:
| Q |
268 |
acatgcacctctctcatgaacaagagtaataatgttgactggagat--caaaaagcaaaatcacatcgtaaagctaaa |
343 |
Q |
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| T |
39867053 |
acatgcatatctctcgtgaacaagagtaataatgttgacacgagataaaaaaaagtaaaatcatatggtaaagctaaa |
39867130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 39866876 - 39866909
Alignment:
| Q |
83 |
ttttagcaacccttcctaactcttcgtttttact |
116 |
Q |
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| T |
39866876 |
ttttagcaaccattcctaactcttcgtttttact |
39866909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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