View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14143_low_22 (Length: 251)
Name: NF14143_low_22
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14143_low_22 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 2046483 - 2046733
Alignment:
| Q |
1 |
cctgatactctcaaaccagaagagattcctgtggtatgcaggtactagtacgtttgtatgcatgtgtatnnnnnnnnttatgtgctccttgaactttggt |
100 |
Q |
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| T |
2046483 |
cctgatactctcaaaccagaagagattcctgtggtatgcaggtactagtacatttgtatgcatgtgtataaaaaaaattatgtgctccttgaactttggt |
2046582 |
T |
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| Q |
101 |
tattctaattttagcaccgtcgacacttcagattcaaggtgtcttcagtgtctgattaattacattcaattatacaattttcaaatttatagaaattatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2046583 |
tattctaattttagcaccgtcgacacttcagattgaaggtgtcttcagtgtctgattaattacattcaattatacaattttcaaatttatagaaattatt |
2046682 |
T |
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| Q |
201 |
gatggacttttcttctaattggctattcattcttgcagagatataatacta |
251 |
Q |
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| T |
2046683 |
gatggacttttcttctaattggctatttattcttgcagagatataatacta |
2046733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 2037106 - 2037286
Alignment:
| Q |
1 |
cctgatactctcaaaccagaagagattcctgtggtatgcaggtactagtacgtttgtatgcatgtgtatnnnnnnnnttatgtgctccttgaactttggt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||| | ||||||||||||||| ||||||||||||||||||||||| |
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| T |
2037106 |
cctgatactcttaaaccagaagagattcctgtggtatgcaggtacttgtacatctgtatgcatgtgtat---gaaatttatgtgctccttgaactttggt |
2037202 |
T |
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| Q |
101 |
tattc--taa-----ttttagcaccgtcgacacttcagattcaaggtgtcttcagtgtctgattaattacattcaattatacaat |
178 |
Q |
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| T |
2037203 |
tattctgtaatctgtttgtagcaccgac-acacatcagattaaaggtgtcttcggtgtgtgattagttgcattcaattgtacaat |
2037286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2054298 - 2054341
Alignment:
| Q |
1 |
cctgatactctcaaaccagaagagattcctgtggtatgcaggta |
44 |
Q |
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| T |
2054298 |
cctgatactctcaaaccagaagagtttcctgtggtatgcaggta |
2054341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2033051 - 2033094
Alignment:
| Q |
1 |
cctgatactctcaaaccagaagagattcctgtggtatgcaggta |
44 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
2033051 |
cctgatactctcaaaccacaagagtttcctgtggtatgcaggta |
2033094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10767687 - 10767730
Alignment:
| Q |
1 |
cctgatactctcaaaccagaagagattcctgtggtatgcaggta |
44 |
Q |
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|||||||||| |||||||||||| |||||||| ||||||||||| |
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| T |
10767687 |
cctgatactcccaaaccagaagatattcctgtagtatgcaggta |
10767730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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