View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14143_low_28 (Length: 236)

Name: NF14143_low_28
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14143_low_28
NF14143_low_28
[»] chr5 (3 HSPs)
chr5 (4-221)||(6887970-6888187)
chr5 (4-64)||(37247606-37247668)
chr5 (95-157)||(37247473-37247535)
[»] chr6 (1 HSPs)
chr6 (73-221)||(1229342-1229490)
[»] scaffold0006 (1 HSPs)
scaffold0006 (64-218)||(75350-75504)
[»] chr4 (6 HSPs)
chr4 (64-219)||(46824764-46824922)
chr4 (64-212)||(21315693-21315844)
chr4 (4-67)||(21315582-21315647)
chr4 (4-67)||(46824653-46824718)
chr4 (142-221)||(16962084-16962162)
chr4 (4-67)||(16962261-16962326)
[»] chr8 (2 HSPs)
chr8 (64-175)||(20762896-20763007)
chr8 (4-143)||(27054436-27054589)
[»] chr7 (2 HSPs)
chr7 (84-221)||(6217973-6218109)
chr7 (4-67)||(6218216-6218281)
[»] chr1 (6 HSPs)
chr1 (112-221)||(43578800-43578909)
chr1 (96-221)||(24908820-24908944)
chr1 (4-44)||(24909027-24909067)
chr1 (73-143)||(29112435-29112505)
chr1 (4-40)||(24909123-24909159)
chr1 (8-67)||(29112552-29112613)
[»] chr2 (1 HSPs)
chr2 (4-67)||(11445474-11445539)
[»] scaffold0191 (1 HSPs)
scaffold0191 (154-206)||(30690-30742)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 6887970 - 6888187
Alignment:
Q  4 atcacaacaatgcacaaatattcttaaatcatttattctatcatagtgtataataacttaaattacaacattacaacactatacaatacgaaaataggcg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6887970 atcacaacaatgcacaaatattcttaaatcatttattctatcatagtgtataataacttaaattacaacattacaacactatacaatacgaaaataggcg 6888069  T
Q  104 atgagagcaatatgagatattattggctcatcacagtctctcattatctatttttccttatgaacggtgttgtgtttttcacttccgcaatggtgtgtcg 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6888070 atgagagcaatatgagatattattggctcatcacagtctctcattatccatttttccttatgaacggtgttgtgtttttcacttccgcaatggtgtgtcg 6888169  T
Q  204 cattcgtaacagagtttt 221  Q
    ||||||||||||||||||    
T  6888170 cattcgtaacagagtttt 6888187  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 37247668 - 37247606
Alignment:
Q  4 atcacaacaatgcacaaatattcttaaatcatttattctatc--atagtgtataataacttaa 64  Q
    |||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||    
T  37247668 atcacaacaatgcacaaatattattaaatcatttattctatcatatagtgtataataacttaa 37247606  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 37247535 - 37247473
Alignment:
Q  95 aaataggcgatgagagcaatatgagatattattggctcatcacagtctctcattatctatttt 157  Q
    |||||||| |||| || |||||| || | ||||||||||||||||||||||| ||||||||||    
T  37247535 aaataggcaatgaaagaaatatgggagagtattggctcatcacagtctctcagtatctatttt 37247473  T

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Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 1229342 - 1229490
Alignment:
Q  73 attacaacactatacaatacgaaaataggcgatgagagcaatatgagatattattggctcatcacagtctctcattatctatttttccttatgaacggtg 172  Q
    ||||||||||||||||| |  |||||||||||||| || | ||||||||| ||||| ||||||||| |||||| ||||||||||||||||| ||||||||    
T  1229342 attacaacactatacaacattaaaataggcgatgaaagtattatgagatactattgactcatcacaatctctcgttatctatttttccttaggaacggtg 1229441  T
Q  173 ttgtgtttttcacttccgcaatggtgtgtcgcattcgtaacagagtttt 221  Q
    ||||| ||||| |||||| |||||||||||||||||||||| |||||||    
T  1229442 ttgtgcttttcgcttccgtaatggtgtgtcgcattcgtaacggagtttt 1229490  T

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Target: scaffold0006 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 75504 - 75350
Alignment:
Q  64 aattacaacattacaacactatacaatacgaaaataggcgatgagagcaatatgagatattattggctcatcacagtctctcattatctatttttcctta 163  Q
    ||||||||||||||||| |||||||| | ||||||||||||||| |  ||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  75504 aattacaacattacaacgctatacaacatgaaaataggcgatgaaatgaatatgagatactatcagctcatcacagtctctcattatctatttttcctta 75405  T
Q  164 tgaacggtgttgtgtttttcacttccgcaatggtgtgtcgcattcgtaacagagt 218  Q
    |||||||||||||||||||| |  ||| |||||||| | ||||| ||||| ||||    
T  75404 tgaacggtgttgtgtttttcgcaaccgtaatggtgtattgcatttgtaacggagt 75350  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 219
Target Start/End: Original strand, 46824764 - 46824922
Alignment:
Q  64 aattacaacattacaacactatacaatacgaaaataggcgatgagagcaatatgagatattattggc---tcatcacagtctctcattatctatttttcc 160  Q
    |||||||| ||||||||||||||||| | ||||||| ||||||| || ||||||||||| |||||||   |||||||||| ||||||||| ||||||| |    
T  46824764 aattacaatattacaacactatacaacatgaaaataagcgatgaaagaaatatgagatactattggcggctcatcacagtttctcattatatattttttc 46824863  T
Q  161 ttatgaacggtgttgtgtttttcacttccgcaatggtgtgtcgcattcgtaacagagtt 219  Q
    ||||||||||||||||||||||| |||||| ||||||||||| ||||| |||| |||||    
T  46824864 ttatgaacggtgttgtgtttttcgcttccgtaatggtgtgtcacattcctaacggagtt 46824922  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 21315693 - 21315844
Alignment:
Q  64 aattacaacattacaacactatacaatacgaaaataggcgatgagagcaatatgagatattattggctcatcacagtctctcattatctattttt---cc 160  Q
    |||||| ||||||||| ||||| ||| | |||| |||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||   ||    
T  21315693 aattactacattacaaaactatgcaacatgaaagtaggcgatgaaagcaatatgagatactattggctcatcactgtctctcattatctatttttttacc 21315792  T
Q  161 ttatgaacggtgttgtgtttttcacttccgcaatggtgtgtcgcattcgtaa 212  Q
    |||| |||| |||| ||||||| |||| || ||||||||||||||| |||||    
T  21315793 ttatcaacgatgttatgtttttaactttcgtaatggtgtgtcgcatccgtaa 21315844  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 21315582 - 21315647
Alignment:
Q  4 atcacaacaatgcacaaatattcttaaatcatttattctatc--atagtgtataataacttaaatt 67  Q
    |||||||||||||||||||||| || ||||||||||||||||  ||||||||||||||||||||||    
T  21315582 atcacaacaatgcacaaatattatttaatcatttattctatcatatagtgtataataacttaaatt 21315647  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 46824653 - 46824718
Alignment:
Q  4 atcacaacaatgcacaaatattcttaaatcatttattctatc--atagtgtataataacttaaatt 67  Q
    |||||||||||||||||||||| || ||||||||||||||||  ||||||||||| ||||||||||    
T  46824653 atcacaacaatgcacaaatattatttaatcatttattctatcatatagtgtataagaacttaaatt 46824718  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 16962162 - 16962084
Alignment:
Q  142 tctcattatctatttttccttatgaacggtgttgtgtttttcacttccgcaatggtgtgtcgcattcgtaacagagtttt 221  Q
    |||||||||||| ||| |||||||||| |||||||||||||| |||  | |||| ||||||||||||||||| |||||||    
T  16962162 tctcattatctacttt-ccttatgaacagtgttgtgtttttcgcttttgtaatgatgtgtcgcattcgtaacggagtttt 16962084  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 16962326 - 16962261
Alignment:
Q  4 atcacaacaatgcacaaatattcttaaatcatttattctatc--atagtgtataataacttaaatt 67  Q
    ||||| |||||||||||||||| |||||||||||||||||||  ||| ||||||| ||||||||||    
T  16962326 atcacgacaatgcacaaatattattaaatcatttattctatcatataatgtataaaaacttaaatt 16962261  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 20762896 - 20763007
Alignment:
Q  64 aattacaacattacaacactatacaatacgaaaataggcgatgagagcaatatgagatattattggctcatcacagtctctcattatctatttttcctta 163  Q
    ||||||||||||||||||| |||||| | ||||||||||||||| |  ||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  20762896 aattacaacattacaacaccatacaacatgaaaataggcgatgaaatgaatatgagatactatcagctcatcacagtctctcattatctatttttcctta 20762995  T
Q  164 tgaacggtgttg 175  Q
    ||||||||||||    
T  20762996 tgaacggtgttg 20763007  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 27054436 - 27054589
Alignment:
Q  4 atcacaacaatgcacaaatattcttaaatcatttattctatc--atagtgtataataacttaaattaca------------acattacaacactatacaa 89  Q
    ||||||||||| |||||||||| |||||||||||||||||||  ||| ||||||||||||||||||  |            | |||||||||||||||||    
T  27054436 atcacaacaatccacaaatattattaaatcatttattctatcatataatgtataataacttaaattgaactattattttatatattacaacactatacaa 27054535  T
Q  90 tacgaaaataggcgatgagagcaatatgagatattattggctcatcacagtctc 143  Q
     ||||||||||  ||||| || ||||||||||| ||||| ||||||||| ||||    
T  27054536 cacgaaaatagatgatgaaaggaatatgagatactattgactcatcacaatctc 27054589  T

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Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 6218109 - 6217973
Alignment:
Q  84 atacaatacgaaaataggcgatgagagcaatatgagatattattggctcatcacagtctctcattatctatttttccttatgaacggtgttgtgtttttc 183  Q
    |||||| ||||||||||||| ||| || ||||||||||| || |||||||| | ||||||||||||| |||||||||||||||||| |||||||||||||    
T  6218109 atacaacacgaaaataggcg-tgaaaggaatatgagatactactggctcattagagtctctcattatgtatttttccttatgaacgttgttgtgtttttc 6218011  T
Q  184 acttccgcaatggtgtgtcgcattcgtaacagagtttt 221  Q
     |||| | |||||||||||||||| ||||| |||||||    
T  6218010 gcttctgtaatggtgtgtcgcattagtaacggagtttt 6217973  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 6218281 - 6218216
Alignment:
Q  4 atcacaacaatgcacaaatattcttaaatcatttattctatc--atagtgtataataacttaaatt 67  Q
    |||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||    
T  6218281 atcacaacaatgcacaaatattattaaatcatttattctatcatatagtgtataataacttaaatt 6218216  T

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Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 43578909 - 43578800
Alignment:
Q  112 aatatgagatattattggctcatcacagtctctcattatctatttttccttatgaacggtgttgtgtttttcacttccgcaatggtgtgtcgcattcgta 211  Q
    ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||  |||||||||||||| |||||  ||||||||||||||||||||    
T  43578909 aatatgagatactattggctcatcacactctcgcattatctatttttccttatgaattgtgttgtgtttttcgcttccataatggtgtgtcgcattcgta 43578810  T
Q  212 acagagtttt 221  Q
    ||| ||||||    
T  43578809 acaaagtttt 43578800  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 221
Target Start/End: Complemental strand, 24908944 - 24908820
Alignment:
Q  96 aataggcgatgagagcaatatgagatattattggctcatcacagtctctcattatctatttttccttatgaacggtgttgtgtttttcacttccgcaatg 195  Q
    |||||||||||| || ||||||||||| || ||| |||||||| |||||||||||||||||| ||||||||| | |||||||||||||  ||||| ||||    
T  24908944 aataggcgatgaaaggaatatgagatactactggttcatcacaatctctcattatctatttt-ccttatgaatgttgttgtgtttttcgtttccgtaatg 24908846  T
Q  196 gtgtgtcgcattcgtaacagagtttt 221  Q
    |||||||||||||||||| |||||||    
T  24908845 gtgtgtcgcattcgtaacggagtttt 24908820  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 24909067 - 24909027
Alignment:
Q  4 atcacaacaatgcacaaatattcttaaatcatttattctat 44  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  24909067 atcacaacaatgcacaaatattattaaatcatttattctat 24909027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 29112505 - 29112435
Alignment:
Q  73 attacaacactatacaatacgaaaataggcgatgagagcaatatgagatattattggctcatcacagtctc 143  Q
    ||||||||| || | || |||||||||| | |||| || |||||||||||||||||||||||||| |||||    
T  29112505 attacaacattacataacacgaaaatagacaatgaaaggaatatgagatattattggctcatcactgtctc 29112435  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 24909159 - 24909123
Alignment:
Q  4 atcacaacaatgcacaaatattcttaaatcatttatt 40  Q
    |||||||||||||||||||||| ||||||||||||||    
T  24909159 atcacaacaatgcacaaatattattaaatcatttatt 24909123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 29112613 - 29112552
Alignment:
Q  8 caacaatgcacaaatattcttaaatcatttattctatc--atagtgtataataacttaaatt 67  Q
    |||||||||| ||||||  ||||||||||||||| |||  ||| ||||||||||||||||||    
T  29112613 caacaatgcataaatatcattaaatcatttattccatcatataatgtataataacttaaatt 29112552  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 11445539 - 11445474
Alignment:
Q  4 atcacaacaatgcacaaatattcttaaatcatttattctatc--atagtgtataataacttaaatt 67  Q
    ||||||||||| ||| |||||| |||||||||||||||||||  ||| ||||||||||||||||||    
T  11445539 atcacaacaatccacgaatattattaaatcatttattctatcatataatgtataataacttaaatt 11445474  T

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Target: scaffold0191 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 30742 - 30690
Alignment:
Q  154 tttttccttatgaacggtgttgtgtttttcacttccgcaatggtgtgtcgcat 206  Q
    ||||| |||||||||||||||||||| ||| |||||  || ||||||||||||    
T  30742 ttttttcttatgaacggtgttgtgttcttcgcttccataacggtgtgtcgcat 30690  T

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