View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14143_low_34 (Length: 225)

Name: NF14143_low_34
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14143_low_34
NF14143_low_34
[»] chr4 (3 HSPs)
chr4 (11-171)||(12888485-12888642)
chr4 (71-153)||(46879468-46879551)
chr4 (169-214)||(12888580-12888625)
[»] chr8 (5 HSPs)
chr8 (11-171)||(38149190-38149348)
chr8 (11-171)||(20519239-20519396)
chr8 (11-171)||(32919185-32919341)
chr8 (159-214)||(20519334-20519389)
chr8 (159-214)||(38149197-38149252)
[»] chr2 (1 HSPs)
chr2 (11-171)||(36593140-36593296)
[»] chr3 (1 HSPs)
chr3 (11-171)||(49358794-49358956)
[»] chr6 (3 HSPs)
chr6 (15-171)||(22696786-22696938)
chr6 (11-106)||(34502715-34502810)
chr6 (109-159)||(34501370-34501420)
[»] chr7 (2 HSPs)
chr7 (12-166)||(36934480-36934631)
chr7 (35-151)||(5892651-5892769)
[»] chr1 (1 HSPs)
chr1 (12-155)||(32946613-32946756)
[»] chr5 (3 HSPs)
chr5 (112-171)||(27631918-27631977)
chr5 (11-132)||(36607593-36607717)
chr5 (44-93)||(27631967-27632018)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 12888485 - 12888642
Alignment:
Q  11 catcatcatcgccacacccttgagctcaccaccacacaagaaagagacagtaaacttcgcctcccaactcaacaccaacaaccgtcacttgtgatatcca 110  Q
    |||||||||||||||||  |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||| |||    
T  12888485 catcatcatcgccacac--ttgaactcaccac-acacaagaaagagacagtaaacttcgcctcccaactcaacaccaacaaccaccacctgtgataccca 12888581  T
Q  111 tcaccaacaaccaccaaaatcaccatcaactcaataaaccatgaccttagatctgagatca 171  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  12888582 tcaccaacaaccaccaaaattaccatcaactcaataaaccatgaccttagatttgagatca 12888642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 46879551 - 46879468
Alignment:
Q  71 ctcccaactcaacaccaacaaccgtca-cttgtgatatccatcaccaacaaccaccaaaatcaccatcaactcaataaaccatg 153  Q
    |||||||||||||||||||||||  || |||| |||| ||||||| ||||| ||| ||||||||||| ||||||||||| ||||    
T  46879551 ctcccaactcaacaccaacaaccaccatcttgagatacccatcacaaacaatcactaaaatcaccattaactcaataaaacatg 46879468  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 12888625 - 12888580
Alignment:
Q  169 tcatggttaattgagttgatggtgattttgatggttgttgatgatg 214  Q
    |||||||| |||||||||||||| |||||| ||||||||| |||||    
T  12888625 tcatggtttattgagttgatggtaattttggtggttgttggtgatg 12888580  T

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Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 38149348 - 38149190
Alignment:
Q  11 catcatcatcgccacaccctt-gagctcaccaccacacaagaaagagacagtaaacttcgcctcccaactcaacaccaacaaccgtcacttgtgatatcc 109  Q
    |||||||||||||||||||   || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||   ||||||||||  |    
T  38149348 catcatcatcgccacaccccccgaactcaccaccacacaagaaagagacaataaacttcgcctcccaactcaacaccaaccacc---acttgtgatactc 38149252  T
Q  110 atcaccaacaaccaccaaaatcaccatcaactcaataaaccatgaccttagatctgagatca 171  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38149251 atcaccaacaaccaccaaaataaccatcaactcaataaaccatgaccttagatctgagatca 38149190  T

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Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 20519239 - 20519396
Alignment:
Q  11 catcatcatcgccacacccttgagctcaccaccacacaagaaagagacagtaaacttcgcctcccaactcaacaccaacaaccgtcacttgtgatatcca 110  Q
    |||||||||||||| ||||  || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||   ||||| ||||| |||    
T  20519239 catcatcatcgccatacccccgaactcaccaccacacaagaaagagacaataaacttcgcctcccaactcaacaccaaccac---cacttatgataccca 20519335  T
Q  111 tcaccaacaaccaccaaaatcaccatcaactcaataaaccatgaccttagatctgagatca 171  Q
    ||||||||||||||||||||| |||||||| |||| |||||||| ||||||||||||||||    
T  20519336 tcaccaacaaccaccaaaatctccatcaacacaatcaaccatgatcttagatctgagatca 20519396  T

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Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 32919341 - 32919185
Alignment:
Q  11 catcatcatcgccacacccttgagctcaccaccacacaagaaagagacagtaaacttcgcctcccaactcaacaccaacaaccgtcacttgtgatatcca 110  Q
    ||||||||| |||||||||  || ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||   ||||||||||| |||    
T  32919341 catcatcattgccacacccacgaactcaccaccacacaagaaagagatagtgaacttcgcctcccaactcaacaccaaccac---cacttgtgataccca 32919245  T
Q  111 tcaccaacaaccaccaaaatcaccatcaactcaataaaccatgaccttagatctgagatca 171  Q
    ||||||||||||||| |||| |||||||||||||||||  |||||||||||| ||||||||    
T  32919244 tcaccaacaaccacc-aaataaccatcaactcaataaattatgaccttagatatgagatca 32919185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 20519389 - 20519334
Alignment:
Q  159 agatctgagatcatggttaattgagttgatggtgattttgatggttgttgatgatg 214  Q
    |||||| ||||||||||| |||| |||||||| ||||||| ||||||||| |||||    
T  20519389 agatctaagatcatggttgattgtgttgatggagattttggtggttgttggtgatg 20519334  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 38149197 - 38149252
Alignment:
Q  159 agatctgagatcatggttaattgagttgatggtgattttgatggttgttgatgatg 214  Q
    |||||| || |||||||| |||||||||||||| |||||| ||||||||| |||||    
T  38149197 agatctaaggtcatggtttattgagttgatggttattttggtggttgttggtgatg 38149252  T

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Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 36593140 - 36593296
Alignment:
Q  11 catcatcatcgccacacccttgagctcaccaccacacaagaaagagacagtaaacttcgcctcccaactcaacaccaacaaccgtcacttgtgatatcca 110  Q
    ||||||||||||| |||||  || ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||||| |||    
T  36593140 catcatcatcgccccacccccgaactccccacc-cacaagaaagagacagtaaacttcgcctcccaactcaacaccaaccacc---acttgtgataccca 36593235  T
Q  111 tcaccaacaaccaccaaaatcaccatcaactcaataaaccatgaccttagatctgagatca 171  Q
    |||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  36593236 tcacaaacaaccaccaaaataaccatcaactcaataatccatgaccttagatctgagatca 36593296  T

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Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 49358794 - 49358956
Alignment:
Q  11 catcatcatcgccacacccttgagctcaccaccacacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaacaaccgtcacttgtgatatc 108  Q
    ||||||||||||||||||| ||| |||||| |||||||||||||||||||| |||  ||||||| ||| ||||||||||| ||||  ||||||||||| |    
T  49358794 catcatcatcgccacacccctgaactcaccgccacacaagaaagagacagtgaacatttcgccttccacctcaacaccaaaaaccaccacttgtgatacc 49358893  T
Q  109 catcaccaacaaccaccaaaatcaccatcaactcaataaaccatgaccttagatctgagatca 171  Q
    |||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||| ||||    
T  49358894 catcaccaacaaccaccaaaatcaccatgaacttaataaaccataaccttagatctgatatca 49358956  T

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Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 22696786 - 22696938
Alignment:
Q  15 atcatcgccacacccttgagctcaccaccacacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaacaaccgtcacttgtgatatccatc 112  Q
    |||||||||||||||   | ||||||||||||||||||||||||||| |||  ||||||||||| || |||||||||||||  ||||||||||| | |||    
T  22696786 atcatcgccacacccccaaactcaccaccacacaagaaagagacagtgaacatttcgcctcccagctaaacaccaacaaccaccacttgtgataccgatc 22696885  T
Q  113 accaacaaccaccaaaatcaccatcaactcaataaaccatgaccttagatctgagatca 171  Q
    ||||||||||      ||||||||||||||||||| |||||||||||||||||||||||    
T  22696886 accaacaacc------atcaccatcaactcaataatccatgaccttagatctgagatca 22696938  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 34502810 - 34502715
Alignment:
Q  11 catcatcatcgccacacccttgagctcaccaccacacaagaaagagacagtaaacttcgcctcccaactcaacaccaacaaccgtcacttgtgata 106  Q
    |||||||||| |||||||||  | |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||    
T  34502810 catcatcatctccacaccctcaaactcaccaccacagaagaaagagacagtaaacttcgcctcccaactcaacagcaacaaccaccacttgtgata 34502715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 34501420 - 34501370
Alignment:
Q  109 catcaccaacaaccaccaaaatcaccatcaactcaataaaccatgacctta 159  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  34501420 catcaccaacaaccactaaaatcaccatcaactcaatataccatgacctta 34501370  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 36934480 - 36934631
Alignment:
Q  12 atcatcatcgccacacccttgagctcaccaccacacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaacaaccgtcacttgtgatatcc 109  Q
    |||||||||||||||||   || ||||||||||||  |||| |||||||| ||   |||||||||||||||||||||||  |||  ||||||||||| ||    
T  36934480 atcatcatcgccacacctccgaactcaccaccaca--agaa-gagacagtgaatatttcgcctcccaactcaacaccaaacaccaccacttgtgataccc 36934576  T
Q  110 atcaccaacaaccaccaaaatcaccatcaactcaataaaccatgaccttagatctga 166  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||||||| |||||||    
T  36934577 atcaccaacaaccaccaaaattaccatcaa--caataaaccatgaccttcgatctga 36934631  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 5892769 - 5892651
Alignment:
Q  35 ctcaccaccacacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaacaaccgtcacttgtgatatccatcaccaacaaccaccaaaatca 132  Q
    ||||| ||||||||||||||||||||| |||  |||||||||||||| ||||||||  |||  ||||||||||| ||||||| ||| | |||||||||||    
T  5892769 ctcacaaccacacaagaaagagacagtgaacatttcgcctcccaacttaacaccaaacaccaccacttgtgatacccatcactaacgaacaccaaaatca 5892670  T
Q  133 ccatcaactcaataaacca 151  Q
    |||||||||||||| ||||    
T  5892669 ccatcaactcaatacacca 5892651  T

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Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 32946756 - 32946613
Alignment:
Q  12 atcatcatcgccacacccttgagctcaccaccacacaagaaagagacagtaaacttcgcctcccaactcaacaccaacaaccgtcacttgtgatatccat 111  Q
    |||||| || ||||||||  || |||||||||||||||||||||    | | | |||||||||||| |||||| ||||||||  |||||||||||   ||    
T  32946756 atcatcgtcaccacacccacgaactcaccaccacacaagaaagacggtgaacatttcgcctcccaaatcaacatcaacaaccaccacttgtgatacatat 32946657  T
Q  112 caccaacaaccaccaaaatcaccatcaactcaataaaccatgac 155  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    
T  32946656 caccaacaaccaccaaaattaccattaactcaataaaccatgac 32946613  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 27631977 - 27631918
Alignment:
Q  112 caccaacaaccaccaaaatcaccatcaactcaataaaccatgaccttagatctgagatca 171  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  27631977 caccaacaaccaccaaaatcaccatcaactcaataaatcattaccttagatctgagatca 27631918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 36607717 - 36607593
Alignment:
Q  11 catcatcatcgccacacccttgagctcaccaccacacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaaca-accgtcacttgtgatat 107  Q
    |||||||||| ||||||||  || ||||| | ||||| ||||||||||| | |||  ||||||||||||||||||||||| | |||  |||| ||||||     
T  36607717 catcatcatcaccacacccccgaactcactatcacacgagaaagagacattgaacatttcgcctcccaactcaacaccaaaacaccaccactcgtgatac 36607618  T
Q  108 ccatcaccaacaaccaccaaaatca 132  Q
    ||||||| |||||||||||||||||    
T  36607617 ccatcactaacaaccaccaaaatca 36607593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 27632018 - 27631967
Alignment:
Q  44 acacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaacaacc 93  Q
    |||||||||||||||| | |||  ||||||||||||||||||||||||||||    
T  27632018 acacaagaaagagacaatgaacatttcgcctcccaactcaacaccaacaacc 27631967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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