View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14143_low_37 (Length: 214)

Name: NF14143_low_37
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14143_low_37
NF14143_low_37
[»] chr3 (10 HSPs)
chr3 (1-102)||(10360254-10360355)
chr3 (4-102)||(10584404-10584506)
chr3 (1-77)||(9980923-9981003)
chr3 (1-152)||(10264344-10264510)
chr3 (28-102)||(10130447-10130521)
chr3 (26-102)||(10372411-10372487)
chr3 (26-77)||(10035547-10035598)
chr3 (33-72)||(10430328-10430367)
chr3 (162-199)||(10430487-10430524)
chr3 (12-85)||(10504579-10504651)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-77)||(54134-54214)
[»] chr2 (1 HSPs)
chr2 (1-102)||(26910526-26910626)


Alignment Details
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 10360254 - 10360355
Alignment:
Q  1 tcaagtgagcagattatcatccatataggcctttgatctcctgaaaagatgaaataagcattttcctttgattagctctaaagacatgattgttcaattt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10360254 tcaagtgagcagattatcatccacataggcctttgatctcctgaaaagttgaaataagcattttcctttgattagctccaaagacatgattgttcaattt 10360353  T
Q  101 tt 102  Q
    ||    
T  10360354 tt 10360355  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 10584506 - 10584404
Alignment:
Q  4 agtgagcagattatcatccatatag----gcctttgatctcctgaaaagatgaaataagcattttcctttgattagctctaaagacatgattgttcaatt 99  Q
    |||||||||||||||||||| ||||    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  10584506 agtgagcagattatcatccacatagctaggcctttgatctcctgaaaagttgaaataagcattttcctttgattagctccaaagacatgattgttaaatt 10584407  T
Q  100 ttt 102  Q
    |||    
T  10584406 ttt 10584404  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9981003 - 9980923
Alignment:
Q  1 tcaagtgagcagattatcatccatatag----gcctttgatctcctgaaaagatgaaataagcattttcctttgattagct 77  Q
    ||||||||||||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9981003 tcaagtgagcagattatcatccacatagctaggcctttgatctcctgaaaagatgaaataagcattttcctttgattagct 9980923  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 10264510 - 10264344
Alignment:
Q  1 tcaagtgagcagattatcatccatataggcctttga-------tctcctgaaaagatgaaataagcattttcctttgattagctctaaagacatgattgt 93  Q
    |||||||||| |||||||||||| ||||||||||||       ||| |||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  10264510 tcaagtgagctgattatcatccacataggcctttgaactttgatcttctgaaaagatgaaataagcattttcctttgattagctccaaggacatgattgt 10264411  T
Q  94 tcaatttt--------tcgacaatgatctttcgacaattccatatagattacactttaccaaacata 152  Q
    | ||||||        | || |||| ||||||||||||||||| ||||||||  ||||| |||||||    
T  10264410 taaatttttattgttgtagaaaatgttctttcgacaattccatttagattactgtttacaaaacata 10264344  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 10130521 - 10130447
Alignment:
Q  28 ggcctttgatctcctgaaaagatgaaataagcattttcctttgattagctctaaagacatgattgttcaattttt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||| |||||||    
T  10130521 ggcctttgatctcctgaaaagatgaaataagcattttcctttgattagctccgaagatatgattgttaaattttt 10130447  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 10372411 - 10372487
Alignment:
Q  26 taggcctttgatctcctgaaaagatgaaataagcattttcctttgattagctctaaagacatgattgttcaattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||| ||||||||| |||||||    
T  10372411 taggcctttgatctcctgaaaagatgaaataaacattttcctttgattagctccgaagatatgattgttaaattttt 10372487  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 10035598 - 10035547
Alignment:
Q  26 taggcctttgatctcctgaaaagatgaaataagcattttcctttgattagct 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035598 taggcctttgatctcctgaaaagatgaaataagcattttcctttgattagct 10035547  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 10430328 - 10430367
Alignment:
Q  33 ttgatctcctgaaaagatgaaataagcattttcctttgat 72  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  10430328 ttgatctcctgaaaagatcaaataagcattttcctttgat 10430367  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 10430487 - 10430524
Alignment:
Q  162 tttttgctatgatttcctgagattaatgtagcagttac 199  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  10430487 tttttgcaatgatttcctgagattaatgtagcagttac 10430524  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 10504651 - 10504579
Alignment:
Q  12 gattatcatccatataggcctttgatctcctgaaaagatgaaataagcattttcctttgattagctctaaagac 85  Q
    |||| |||||||  |||||||| ||||||||| |||||| ||||||||||||| |||| ||||||||| |||||    
T  10504651 gattttcatccacttaggcctt-gatctcctgtaaagatcaaataagcatttttctttcattagctctgaagac 10504579  T

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Target: scaffold0083 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 54134 - 54214
Alignment:
Q  1 tcaagtgagcagattatcatccatatag----gcctttgatctcctgaaaagatgaaataagcattttcctttgattagct 77  Q
    ||||||||||||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54134 tcaagtgagcagattatcatccacatagctaggcctttgatctcctgaaaagatgaaataagcattttcctttgattagct 54214  T

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Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 26910626 - 26910526
Alignment:
Q  1 tcaagtgagcagattatcatccatataggcctttgatctcctgaaaagatgaaataagcattttcctttgattagctctaaagacatgattgttcaattt 100  Q
    |||||||||| |||| ||||| |  ||||| ||||||||||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||  |||||    
T  26910626 tcaagtgagctgattttcatcaacttaggc-tttgatctcctgaaaagatcaaataagcatttttctttaattagctccaaagacatgattgtcaaattt 26910528  T
Q  101 tt 102  Q
    ||    
T  26910527 tt 26910526  T

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