View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14143_low_39 (Length: 211)
Name: NF14143_low_39
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14143_low_39 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 27508409 - 27508199
Alignment:
| Q |
1 |
ccaccggagttgcaagatgatggtggtgaaggtaaccggctgtggaaggaggagcgcggtggtagtaaggcgagaattgattgctgtggtgatggtattg |
100 |
Q |
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| T |
27508409 |
ccaccggagttgcaagatgatggtggtgaaggtaaccggctgtggaaggaggagcacggtggtagtaaggcgagaattgattgttgtggtgatggtattg |
27508310 |
T |
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| Q |
101 |
cggcggtggaggtggtgggtgtggccggttaaatgaactaaccggttcaccatcgatctctttgcgggggaagttccggagaaagttacaagctgcgcaa |
200 |
Q |
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| T |
27508309 |
cggcggtggaggtggtggctgtggccggttacatgaactaaccgtttcaccatcgatctctttgcggtggaagttccggtgacagttacaagcggcgcaa |
27508210 |
T |
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| Q |
201 |
ataacagcttc |
211 |
Q |
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||||||||||| |
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| T |
27508209 |
ataacagcttc |
27508199 |
T |
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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 35192866 - 35192931
Alignment:
| Q |
146 |
ttcaccatcgatctctttgcgggggaagttccggagaaagttacaagctgcgcaaataacagcttc |
211 |
Q |
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| T |
35192866 |
ttcaccatcgatctctttgcggtggaagttctggtgacagttacaagcggcgcaaataacagcttc |
35192931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 44747927 - 44747992
Alignment:
| Q |
146 |
ttcaccatcgatctctttgcgggggaagttccggagaaagttacaagctgcgcaaataacagcttc |
211 |
Q |
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|||||||||||||||||||| | |||||||| || || |||||||||| ||||||||||||||||| |
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| T |
44747927 |
ttcaccatcgatctctttgcagtggaagttctggtgacagttacaagcggcgcaaataacagcttc |
44747992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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