View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14143_low_6 (Length: 452)
Name: NF14143_low_6
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14143_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 24300027 - 24300278
Alignment:
| Q |
15 |
ggtagatggacgttgatgaaagccagagggaggagaagccaaaataatgttaccaatgnnnnnnnncttttcataacaattaattgagagaacctaaact |
114 |
Q |
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| T |
24300027 |
ggtagatggacgttgatgaaagccagagggaggagaggccaaaataacgttaccaatatttttttccttttcataacaattaattgagagaacctaaact |
24300126 |
T |
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| Q |
115 |
acaccttgaagagtgannnnnnnn-cttttaataacaattaactttgaagagtgatttttggtccaaataaaaagatgcaagacgctaaaatacaccttg |
213 |
Q |
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| T |
24300127 |
acaccttgaagagtgatttttttttcttttcataacaattatctttgaagagtgatttttggtccaaataaaaagatgcaagacgctaaaatacaccttg |
24300226 |
T |
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| Q |
214 |
aagcattgctataacatcataatttcatttttcgttatggtaatagtagtattttc |
269 |
Q |
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| T |
24300227 |
aagcattgctataacatcataatttcattt----ttatggtaatagcagtattttc |
24300278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 288 - 372
Target Start/End: Complemental strand, 24241970 - 24241886
Alignment:
| Q |
288 |
taaactcatcactattcagccatttcatcattgttcaagccttgtttcaatcaaatttccttctctttgaaatctcaaatattac |
372 |
Q |
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| T |
24241970 |
taaactcatcactattcagtcatttcatcattgttcaagccttgtttcaatcaaatttccatctctttgaaatctcaaatattac |
24241886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 24242166 - 24242075
Alignment:
| Q |
15 |
ggtagatggacgttgatgaaagccagagggaggagaagccaaaataatgttaccaatgnnnnnnnncttttcataacaattaattgagagaa |
106 |
Q |
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| T |
24242166 |
ggtagatggccgttgatgaaagccagagggaggagaggccaaaataacgttaccaatattttttttcttttcataacaattaattgagagaa |
24242075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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