View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14143_low_8 (Length: 397)
Name: NF14143_low_8
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14143_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 35 - 385
Target Start/End: Complemental strand, 8008761 - 8008411
Alignment:
| Q |
35 |
caacccattaagtgtactaaggttccataggggctctagaaacaccggatcaacacatttatgcaataagtttggtggtcatttctctcagcctcccttc |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8008761 |
caacccattaagtgtactaaggttccataggggctctagaaacaccggatcaacacatttatgcaataagtttggtggtcatttctctcagcctcacttc |
8008662 |
T |
|
| Q |
135 |
caactacacttgccaattttaaggctttggtgttatgattctcaaatatttccttcagcaaacatatatgatgggatatgtgttcccttcaaatccatgc |
234 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8008661 |
caactacactttccaattttaaggctttggtgttatgattctcaaatatttccttcagcaaacatatataatgggatatgtgttcccttcaaatccatgc |
8008562 |
T |
|
| Q |
235 |
agtcaccagcaacaacatagtattcacaccaagaataactaagtgaagaagacatgatatattaattagtggagtgtcatgcacgaagacagataggtta |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8008561 |
agtcaccagcaacaacatagtattcacaccaagaataactaagtgaagaagacatgatatattaattagtggagtgtcatgcacgaagacagataggtta |
8008462 |
T |
|
| Q |
335 |
tattccatcacttaaagttaggtcaaattctatctctgtaaagttaggttc |
385 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
8008461 |
tattccatcacttaaagttaagtcaaattttatctctgtaaagttaggttc |
8008411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University