View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14143_low_9 (Length: 393)
Name: NF14143_low_9
Description: NF14143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14143_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 30376734 - 30377116
Alignment:
| Q |
1 |
tttggaactagtttgccaatttcttatcaagaggtccatgtattttcctcttcctatacgttgacattttcataaggatcacgagccttaaatcaatagt |
100 |
Q |
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| T |
30376734 |
tttggaactagtttgccaatttcttatcaagaggtccatatattttcctcttcttatacgttgacattttcataaggatcacgagccttaaatcaatagt |
30376833 |
T |
|
| Q |
101 |
atnnnnnnn-cttcaaattattttttatatatatgtaatactaatgtgaacattgaactaatttataaattggaccgttggtggaaattgaccaagtttc |
199 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30376834 |
ataaaaaaaacttcaaattattttttatatatatgtaatactaatgtgaacattgaactaatttataaattggaccgttggtggaaattgaccaagtttc |
30376933 |
T |
|
| Q |
200 |
ctagccattagga-------gcactgactccgtcccctgccgaccaccatttgtgacatgcacagaataatgaaacttatcattatgaaccttaggaatt |
292 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30376934 |
ctagccattaggacttaggagcactgactccgtcccctgccgaccaccatttgtgacatgcacagaataatgaa-cttatcattatgaaccttaggaatt |
30377032 |
T |
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| Q |
293 |
aatgaagattttcaatttaatttagaccaaaattaaggtggggaataaaatagctaagtgtacaaattaaggtggggatactat |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30377033 |
aatgaagattttcaatttaatttagaccaaaattaaggtggggaataaaatagctaagtgtacaaattaaggtggggatactat |
30377116 |
T |
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