View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14144_high_1 (Length: 531)
Name: NF14144_high_1
Description: NF14144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14144_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 7 - 431
Target Start/End: Complemental strand, 37492342 - 37491918
Alignment:
| Q |
7 |
aatgaaatggaatggattggatcagaatggatcggattggacggaacacagcttctgtaatctgaactgctttgctccttatcctttgccatttcaagta |
106 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37492342 |
aatgaaatggaatggattggatcggaatggatcggattggacggaacacagcttctgtaatctgaactgctttgctccttatcctttgccatttcaagta |
37492243 |
T |
|
| Q |
107 |
aaacaaccaaagaaatcaaagcatcattacaaaaataagagtagcatcattctaatttgaaattaaatgtaaacagaatgatcttaaccactatgcagta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37492242 |
aaacaaccaaagaaatcaaagcatcattacaaaaataagagtagcatcattctgatttgaaattaaatgtaaacagaatgattttaaccactatgcagta |
37492143 |
T |
|
| Q |
207 |
tgcacatacaccatgatctaatcataaaacgttgttatactatcaatgattcaattttgatgaggccttatcatctgtttaaaaagattaactttgatgc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
37492142 |
tgcacatacaccatgatctaatcataaaacgttgttatactatcaatgattcaattttgatgaggccttatcatatgtttaaaaagattaattttgatgc |
37492043 |
T |
|
| Q |
307 |
actaaaacttttcacactgtcacacaaccattaaacatcatttgtatgactaaggtttatatgactaaaatcacatatatgtaacgatcgctagtagatg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37492042 |
actaaaacttttcacactgtcacacaaccattaaacatcatttgtatgactaaggtttatatgactaaaatcacatatatgtaatgatcgctagtagatg |
37491943 |
T |
|
| Q |
407 |
atacgaagcacggacacactgacac |
431 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37491942 |
atacgaagcacggacacactgacac |
37491918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 427 - 518
Target Start/End: Complemental strand, 37491854 - 37491762
Alignment:
| Q |
427 |
gacaccggggtacgccttcgatcagaagtgtaattgctac-tatatatatacaagacataagatttgaagaagaaaaagaaattgagattaat |
518 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37491854 |
gacaccggggtacaccttccatcagaagtgtatttgctatatatatatatacaagacataagatttgaaaaagaaaaagaaattgagattaat |
37491762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University