View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14144_high_6 (Length: 317)
Name: NF14144_high_6
Description: NF14144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14144_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 46011728 - 46011442
Alignment:
| Q |
10 |
tcgaagaatattgtatatcccattcttgtgctagtttacatttcaattggtcaagttctttcccaggtaaagaaattgttaccatccttccattattacc |
109 |
Q |
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| T |
46011728 |
tcgaacaatattgtatatcccattcttgtgctagtttacatttcaattggtcaagttctttcccaggtaaagaaattgttaccatccttccattattacc |
46011629 |
T |
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| Q |
110 |
attgtaatcttccggtcctgaaagaaccaaaacaactccttgatcacccacaccacgaaaatcacaatttgccaaaattggtttctgcccattaatcttt |
209 |
Q |
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| T |
46011628 |
attgtaatcttctggtcctgaaagaaccaaaacaactccttgatcacccacaccacgaaaatcacaatttgccaaaattggtttctgcccattaatcttt |
46011529 |
T |
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| Q |
210 |
acaccataaaaattaccttcttccaaatctacaaatgttaactttgctccataaacaataaaatcatcttttccttcaccttcctcc |
296 |
Q |
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| T |
46011528 |
acaccataaaaattaccttcttccaaatctacaaatgttaactttgctccataaacaataaaatcatcttttccttcaccttcctcc |
46011442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 15924768 - 15924492
Alignment:
| Q |
20 |
ttgtatatcccattcttgtgctagtttacatttcaattggtcaagttctttcccaggtaaagaaattgttaccatccttccattattaccattgtaatct |
119 |
Q |
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| T |
15924768 |
ttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaacttttatcattcttccattgttaccatcatcatct |
15924669 |
T |
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| Q |
120 |
tccggtcctgaaagaaccaaaacaactccttgatcacccacaccacgaaaatcacaatttgccaaaattggtttctgcccattaatctttacaccataaa |
219 |
Q |
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| T |
15924668 |
tctggacctggaaaaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcgccctaataggtttctttccattaagctttacaccatata |
15924569 |
T |
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| Q |
220 |
aattaccttcttccaaatctacaaatgttaactttgctccataaacaataaaatcatcttttccttcaccttcctcc |
296 |
Q |
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||| | |||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |||| |
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| T |
15924568 |
aatcagcttcttccaagtctacaaatgttaactttgctccatatacaaaaaaatcatcttttccatcacctttctcc |
15924492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 13116590 - 13116310
Alignment:
| Q |
16 |
aatattgtatatcccattcttgtgctagtttacatttcaattggtcaagttctttcccaggtaaagaaattgttaccatccttccattattaccattgta |
115 |
Q |
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|||||||||| || ||||| ||||||||||||||||| |||||||||||||| || || || |||| ||||| |||||||||||||||||||| |
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| T |
13116590 |
aatattgtattcccaattctcctgctagtttacatttcagctggtcaagttcttttcctggcaatgaaactgttatcatccttccattattaccatcagt |
13116491 |
T |
|
| Q |
116 |
atcttccggtcctgaaagaaccaaaacaactccttgatcacccacaccacgaaaatcacaatttgccaaaattggtttctgcccattaatctttacacca |
215 |
Q |
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| T |
13116490 |
atcttctggtcctggaagaaccaaaacaactccttcatcatgaacaccgcggaaatcacaatttaccataatgggtttctgtccattaatctttatctcg |
13116391 |
T |
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| Q |
216 |
taaaaattaccttcttccaaatctacaaatgttaactttgctccataaacaataaaatcatcttttccttcaccttcctcc |
296 |
Q |
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||||||| | | |||||||| ||||||||||||||||| ||||||||||| ||||||| ||||| |||||||| |||||| |
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| T |
13116390 |
taaaaatcagcctcttccaagtctacaaatgttaacttagctccataaactataaaatgctctttgccttcaccgtcctcc |
13116310 |
T |
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