View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14144_low_1 (Length: 751)
Name: NF14144_low_1
Description: NF14144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14144_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 29 - 735
Target Start/End: Original strand, 12952496 - 12953202
Alignment:
| Q |
29 |
aggagctctctgcaaacatacccaagcaatggggaaaaatagcagtgcgagctcttgatacaaagaatgaataggactatcgacaagatccagaagtttt |
128 |
Q |
| |
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||||| |||||||||||||| | | ||||||| || | |||||| ||| | |||| || ||||||||| |||| |||||| |||||||||| |||||| |
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| T |
12952496 |
aggagatctctgcaaacatagcaatgcaatggtgatacatagcaatgcttgttctttatccaaagaatgtatagaactatcaacaagatccaagagtttt |
12952595 |
T |
|
| Q |
129 |
acattatgagcaagttgtctagcccatgaaattagatttgctctctcgaattctgaaatcggtgatgctgttacttgtaatggtcttcttccagcaacca |
228 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12952596 |
ccattatgagcaagttgtctagcccatgaaattagatttgctctctcgaattctgaaatcggtgatgctgttacttgtaatggtcttcttccagcaacca |
12952695 |
T |
|
| Q |
229 |
gaaccaaaagcagaacaccgaaactatacacatcacatttctcggataattgaccaccactgccgtattcaggagcaatgtaacaaacagttcctctcat |
328 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12952696 |
gaaccaaaagcagaacaccgaaactatacacatcacatttctcggataattgaccaccaccaccgtattcaggagcaatgtaacaaacagttcctctcat |
12952795 |
T |
|
| Q |
329 |
actcggtgtgctacttattccaccactcttcggtatatcaccattaccccaatcttgactatttctccttgcgttagtcctaagctcgccgcttaaacca |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12952796 |
actcggtgtgctacttattccaccactcttcggtatatcaccattaccccaatcttgactatttctccttccgttagtcctaagctcgccgcttaaacca |
12952895 |
T |
|
| Q |
429 |
tccaaccaccaatcaatactccctctactactcttacttttcctctttttctttttctctactgctgcgccgcctacatcctcgtctctctgccaccacg |
528 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||| ||||||||||||||||| |
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|
| T |
12952896 |
tccaaccaccaatcaatactccctctactactcttacttttcctctttttcttcttctctaatggtgggccgcctacatccttgtctctctgccaccacg |
12952995 |
T |
|
| Q |
529 |
attcccctccattgccgcgacaatcaaggcttctctttttcttcctactcttcttcgaaagctcttcacaaaattcctccttccaccattcccttggttt |
628 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12952996 |
attcccctccattgccgcgacaatcaaggcttctctttttcttcctactcttcttcgaaagctcttcacaaaattcctccttccaccattcccttggttt |
12953095 |
T |
|
| Q |
629 |
cctattcttctttcctttaactttctcctcatcaagtgaagcccaccattccaatttcttcctctgcttcttcttaccctccaccttcgactgcgctgcc |
728 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12953096 |
tctattcttctttcctttaactttctcctcatcaagtgaagcccaccattccaatttcttcctctgcttcttcttaccctccaccttcgactgcgctgcc |
12953195 |
T |
|
| Q |
729 |
accacat |
735 |
Q |
| |
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||||||| |
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|
| T |
12953196 |
accacat |
12953202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 46223400 - 46223338
Alignment:
| Q |
296 |
ttcaggagcaatgtaacaaacagttcctctcatactcggtgtgctacttattccaccactctt |
358 |
Q |
| |
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||||||||||| ||| ||||||||||||||||||| || || ||||| ||| |||||||||| |
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| T |
46223400 |
ttcaggagcaacataaaaaacagttcctctcatacttggagtactactaatttcaccactctt |
46223338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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