View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14144_low_11 (Length: 208)
Name: NF14144_low_11
Description: NF14144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14144_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 21011333 - 21011162
Alignment:
| Q |
18 |
tgtagagcatagggtagggagttaggatttggccacatatttcctattgtctgnnnnnnnctccaacccccggtttataaggcaaccttccttatacagt |
117 |
Q |
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| T |
21011333 |
tgtagagcatagggtagggagttaggatttggccacagatttcctattgtctgtttttttctccaacccccggtttataaggcaaccttccttatacagt |
21011234 |
T |
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| Q |
118 |
aacttggactactttttataagacaccttccattcaaccatccctcataacactcctaactctctctttctc |
189 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21011233 |
aacttggactacttcttataagacaccttccattcaaccatccctcataacactcctaactctctctctctc |
21011162 |
T |
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