View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14144_low_3 (Length: 499)
Name: NF14144_low_3
Description: NF14144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14144_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 30356473 - 30356262
Alignment:
| Q |
12 |
catcatcatcaaccttcaaaatcaaatatattaacacactaataaaaagtcaactcaagcttataaactttcccctaaacccaaaattgatttcacagct |
111 |
Q |
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| T |
30356473 |
catcaccatcaacctttaaaatcaaatatattaacacactaataaaaagtcaactcaagcttataaactttcccctaaacccaaaattgatttcacagct |
30356374 |
T |
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| Q |
112 |
gcaaaacctaaaatcaccaaagttccaatcttttgacttaacccatcacagagatcatcaaaatataccaacccacaaagtaaaaactttcaatttttcc |
211 |
Q |
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| T |
30356373 |
gcaaaacctaaaatcaccaaagttccaatcttttgacttaacccatcacagagatcatcaaaatataccaacccacaaagtaaaaactttcaatttttcc |
30356274 |
T |
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| Q |
212 |
attttcaagctc |
223 |
Q |
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|||||||||||| |
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| T |
30356273 |
attttcaagctc |
30356262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 30357708 - 30357642
Alignment:
| Q |
17 |
tcatcaaccttcaaaatcaaatatattaacacactaataaaaagtcaactcaagcttataaactttc |
83 |
Q |
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|||||||||||||||||||||||| ||||| || ||| ||| ||||||||||||||| |||||||| |
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| T |
30357708 |
tcatcaaccttcaaaatcaaatattttaacccataaatcaaatgtcaactcaagcttagaaactttc |
30357642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 481
Target Start/End: Complemental strand, 30356031 - 30356003
Alignment:
| Q |
453 |
aaccgacggtggggtaagggccaggatta |
481 |
Q |
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| T |
30356031 |
aaccgacggtggggtaagggccaggatta |
30356003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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