View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14144_low_5 (Length: 460)
Name: NF14144_low_5
Description: NF14144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14144_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 38767995 - 38768430
Alignment:
| Q |
18 |
ataatgaatgatacactgatattaaggttaatccaggtttgacagaaacatgtggaccaactactcttacatttccagatgaaatgtgcatgctaggcaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38767995 |
ataatgaatgatacactgatattaaggttaatccaggtttgacagaaacatgtggaccaactactcttacatttccagatgaaatgtgcatgctaggtaa |
38768094 |
T |
|
| Q |
118 |
tgttggtgttgtaactgtattcaatgaattgcggctggaggaagttccagacatgggttacaatcctcttggaactcctccatgtggggagatatgtgtc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
38768095 |
tgttggtgttgtaactgtattcaatgaattgcggctggaggaagttccagacatgggttacaatcctcttggaactccgccatgtggagagatatgtgtc |
38768194 |
T |
|
| Q |
218 |
agaggcaaaagtgttttcactggttaccataaaaatcctgagttaacaaaagaagccataatagatggatggtttcacacaggttgaattctcttcttct |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38768195 |
agaggcaaaagtgttttcactggttaccataagaatcctgagttaacaaaagaagccataatagatggatggtttcacacaggttgaattctcttcttct |
38768294 |
T |
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| Q |
318 |
acctcaaaatatttctattattttagcaaatcttgccacgttctaatgtga-nnnnnnnnnnnaatgacaaatattagcatgttagtattttctcctgta |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
38768295 |
acctcaaaatatttctattattttagcaaatcttgccacgttctaatgtgatttattttttttaatgacaaatattagcatgttagtattttctcccgta |
38768394 |
T |
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| Q |
417 |
cgaggattcaaacccttgacctttaactcctttgct |
452 |
Q |
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| T |
38768395 |
cgaggattcaaacccttgacctttaactcttttgct |
38768430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 43 - 307
Target Start/End: Complemental strand, 44996228 - 44995964
Alignment:
| Q |
43 |
ggttaatccaggtttgacagaaacatgtggaccaactactcttacatttccagatgaaatgtgcatgctaggcaatgttggtgttgtaactgtattcaat |
142 |
Q |
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|||||||| ||||||||| ||||| ||||| ||||||||||| ||||||| ||||||||||||||||| || | |||||| |||| || ||| ||| |
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| T |
44996228 |
ggttaatctaggtttgactgaaacttgtgggtcaactactcttgcatttcctgatgaaatgtgcatgcttggtaccgttggtcctgtatctatatacaac |
44996129 |
T |
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| Q |
143 |
gaattgcggctggaggaagttccagacatgggttacaatcctcttggaactcctccatgtggggagatatgtgtcagaggcaaaagtgttttcactggtt |
242 |
Q |
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| T |
44996128 |
gaaatacaactagaagaagttccagagatgggttacaatcctcttggaaatccttcatgtggtgagatatgtcttagagggaaatcagttttctctggct |
44996029 |
T |
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| Q |
243 |
accataaaaatcctgagttaacaaaagaagccataatagatggatggtttcacacaggttgaatt |
307 |
Q |
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| T |
44996028 |
accacaaaaaccctgagttaacaaaggaatccatagtagatggatggtttcacacaggttgaatt |
44995964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 445
Target Start/End: Original strand, 47774091 - 47774140
Alignment:
| Q |
396 |
atgttagtattttctcctgtacgaggattcaaacccttgacctttaactc |
445 |
Q |
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| T |
47774091 |
atgttagtattttctcccttgccaggattcaaaccctggacctttaactc |
47774140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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