View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14144_low_7 (Length: 382)

Name: NF14144_low_7
Description: NF14144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14144_low_7
NF14144_low_7
[»] chr4 (8 HSPs)
chr4 (8-305)||(19469056-19469352)
chr4 (182-344)||(28092748-28092910)
chr4 (213-278)||(9583287-9583352)
chr4 (213-278)||(9588982-9589047)
chr4 (182-242)||(28092851-28092911)
chr4 (182-242)||(54277630-54277690)
chr4 (198-242)||(33108428-33108472)
chr4 (208-252)||(36821722-36821766)
[»] chr5 (4 HSPs)
chr5 (182-344)||(35622820-35622982)
chr5 (185-335)||(38832819-38832969)
chr5 (208-280)||(11315180-11315252)
chr5 (182-242)||(35622819-35622879)
[»] chr3 (10 HSPs)
chr3 (182-344)||(46489660-46489822)
chr3 (182-304)||(53440549-53440671)
chr3 (208-344)||(42273338-42273474)
chr3 (182-304)||(34955076-34955198)
chr3 (177-278)||(39716023-39716124)
chr3 (223-335)||(40280881-40280993)
chr3 (182-242)||(42273337-42273397)
chr3 (182-242)||(46489763-46489823)
chr3 (182-230)||(53440664-53440712)
chr3 (198-242)||(40280887-40280931)
[»] chr2 (5 HSPs)
chr2 (182-344)||(37811094-37811256)
chr2 (183-347)||(32453161-32453325)
chr2 (182-241)||(37811198-37811257)
chr2 (183-241)||(32453264-32453322)
chr2 (214-259)||(32018388-32018433)
[»] scaffold0163 (1 HSPs)
scaffold0163 (222-344)||(28033-28155)
[»] chr1 (6 HSPs)
chr1 (182-325)||(34514456-34514599)
chr1 (177-258)||(5581278-5581359)
chr1 (182-258)||(18056028-18056104)
chr1 (198-278)||(47335324-47335404)
chr1 (208-252)||(31953835-31953879)
chr1 (182-234)||(6223054-6223106)
[»] chr6 (4 HSPs)
chr6 (188-294)||(31030146-31030252)
chr6 (228-344)||(12800300-12800414)
chr6 (182-239)||(29879315-29879372)
chr6 (182-242)||(12800355-12800415)
[»] scaffold0464 (1 HSPs)
scaffold0464 (182-258)||(6427-6503)
[»] chr8 (2 HSPs)
chr8 (210-344)||(40530442-40530576)
chr8 (182-277)||(17495668-17495763)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 19469352 - 19469056
Alignment:
Q  8 aagaaaatggattattataacttttagagaaatttgaaataaaatattgtgacaaatattttgtgaagagtgaaagcgaaagaacaagaatcaaaacaaa 107  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19469352 aagaaaatgtattactataacttttagagaaatttgaaataaaatattgtgacaaatattttgtgaagagtgaaagcgaaagaacaagaatcaaaacaaa 19469253  T
Q  108 gaaagagtgagagttgaataaaatataagaataatattnnnnnnnnnttcattttattcactctcttgttagcgcttgtgtaccattagaatatcaatag 207  Q
    |||||||||||||||||||||||||||||||||||| |         |||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  19469252 gaaagagtgagagttgaataaaatataagaataatact-aaaaaaaattcattttattcactctcttgttagcacttgtgtactattagaatatcaatag 19469154  T
Q  208 tatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagaccttcttatgtggcatgccttcatta 305  Q
    ||||||| |||| ||||||||| |||| |||||||||||||||||| |||||| || ||||| |||||||||||||||||||||  ||||||||||||    
T  19469153 tatataatattggtcaatgaagatgtgtcacatagcacttcacatgtatatatattctcttttctctttagaccttcttatgtgatatgccttcatta 19469056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 344
Target Start/End: Original strand, 28092748 - 28092910
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagacc 281  Q
    ||||||||||||| | ||| ||||  ||||||||||||| |||||||| ||||||| ||| |||||||||||||||| | || |||||||||||||||||    
T  28092748 cttgtgtaccattgggataccaatgttatataacattgaccaatgaagatgtgccatataacacttcacatgcatatcttttctctttcctctttagacc 28092847  T
Q  282 ttcttatgtggcatgccttcattaccccatatcatataacattgatatctcaatagtacacaa 344  Q
    ||| |||||||||  | ||||||  || || | ||||||||||| |||| |||| ||||||||    
T  28092848 ttcctatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaa 28092910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 9583287 - 9583352
Alignment:
Q  213 aacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttag 278  Q
    ||||||| |||||||||||||||||| ||||| ||||||| ||||||| || ||||||||||||||    
T  9583287 aacattggtcaatgaaggtgtgccacgtagcatttcacatacatatattttctctttcctctttag 9583352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 9588982 - 9589047
Alignment:
Q  213 aacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttag 278  Q
    ||||||| |||||||||||||||||| ||||| ||||||| ||||||| || ||||||||||||||    
T  9588982 aacattggtcaatgaaggtgtgccacgtagcatttcacatacatatattttctctttcctctttag 9589047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 28092911 - 28092851
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatag 242  Q
    ||||||||||||| | ||| ||||  |||||||||||| |||||||| |||||||||||||    
T  28092911 cttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacatag 28092851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 54277690 - 54277630
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatag 242  Q
    ||||||||||||| | ||| ||||  |||||||||||| |||||||| |||||||||||||    
T  54277690 cttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacatag 54277630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 33108472 - 33108428
Alignment:
Q  198 atatcaatagtatataacattgatcaatgaaggtgtgccacatag 242  Q
    ||||||||  ||||||||||| |||||||||| ||||||||||||    
T  33108472 atatcaatgttatataacattcatcaatgaagatgtgccacatag 33108428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 36821722 - 36821766
Alignment:
Q  208 tatataacattgatcaatgaaggtgtgccacatagcacttcacat 252  Q
    ||||||||||||  |||||||||||||||||||  ||||||||||    
T  36821722 tatataacattggccaatgaaggtgtgccacatgacacttcacat 36821766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 344
Target Start/End: Complemental strand, 35622982 - 35622820
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagacc 281  Q
    ||||||||||||| | ||| ||||  ||||||||||||| |||||||| ||||||| ||| |||||||||||||||| | || |||||||||||||||||    
T  35622982 cttgtgtaccattgggataccaatgttatataacattgaccaatgaagatgtgccatataacacttcacatgcatatcttttctctttcctctttagacc 35622883  T
Q  282 ttcttatgtggcatgccttcattaccccatatcatataacattgatatctcaatagtacacaa 344  Q
    ||| |||||||||  | ||||||  || || | ||||||||||| |||| |||| ||||||||    
T  35622882 ttcctatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaa 35622820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 335
Target Start/End: Original strand, 38832819 - 38832969
Alignment:
Q  185 gtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagaccttc 284  Q
    ||||||||||  |||| ||||| |||||||||||| ||||  ||| |||||||||||||| |||||||| |||| | || || ||| |||||||||||||    
T  38832819 gtgtaccattgtaataccaatattatataacattggtcaacaaagatgtgccacatagcatttcacatgtatatcttttctcgttcttctttagaccttc 38832918  T
Q  285 ttatgtggcatgccttcattaccccatatcatataacattgatatctcaat 335  Q
     |||||||||  | ||||||  || || | ||||||||||| |||| ||||    
T  38832919 ctatgtggcacactttcattgaccaatgttatataacattggtatcccaat 38832969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 11315180 - 11315252
Alignment:
Q  208 tatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagac 280  Q
    |||||| ||||| |||||||||||||| |||||| |||||||  ||||||| | ||||||||| |||||||||    
T  11315180 tatatatcattggtcaatgaaggtgtgtcacataacacttcatttgcatatcttttatctttcttctttagac 11315252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 35622819 - 35622879
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatag 242  Q
    ||||||||||||| | ||| ||||  |||||||||||| |||||||| |||||||||||||    
T  35622819 cttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacatag 35622879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 344
Target Start/End: Original strand, 46489660 - 46489822
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagacc 281  Q
    ||||||||||||| | ||| ||||  ||||||||||||| |||||||| ||||||| ||| |||||||||||||||| | || |||||||||||||||||    
T  46489660 cttgtgtaccattgggataccaatgttatataacattgaccaatgaagatgtgccatataacacttcacatgcatatcttttctctttcctctttagacc 46489759  T
Q  282 ttcttatgtggcatgccttcattaccccatatcatataacattgatatctcaatagtacacaa 344  Q
    ||| |||||||||  | ||||||  || || | ||||||||||| |||| |||| ||||||||    
T  46489760 ttcctatgtggcacactttcattgaccaatgttatataacattggtatcccaatggtacacaa 46489822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 182 - 304
Target Start/End: Original strand, 53440549 - 53440671
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagacc 281  Q
    ||||||||||||| | ||| ||||  ||||||||| ||| ||||||| ||||||||||||||| ||||||||||||| | || | ||||||||||||||     
T  53440549 cttgtgtaccattgggataccaatgttatataacactgaccaatgaaagtgtgccacatagcagttcacatgcatattttttctatttcctctttagaca 53440648  T
Q  282 ttcttatgtggcatgccttcatt 304  Q
    ||||||||||| |||||||||||    
T  53440649 ttcttatgtggtatgccttcatt 53440671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 208 - 344
Target Start/End: Complemental strand, 42273474 - 42273338
Alignment:
Q  208 tatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagaccttcttatgtggcatgccttcattacc 307  Q
    ||||||||||||| |||||||| ||||||| ||| |||||||||||||||| | || |||||||||||||||||||| |||||||||  | ||||||  |    
T  42273474 tatataacattgaccaatgaagatgtgccatataacacttcacatgcatatcttttctctttcctctttagaccttcctatgtggcacactttcattgac 42273375  T
Q  308 ccatatcatataacattgatatctcaatagtacacaa 344  Q
    | || | ||||||||||| |||| |||| ||||||||    
T  42273374 caatgttatataacattggtatcccaatggtacacaa 42273338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 182 - 304
Target Start/End: Original strand, 34955076 - 34955198
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagacc 281  Q
    ||||||||||||| | ||| ||||  ||||||||||||  ||||||||||||| || ||||||||||| |||||||| | || ||||||||||||||||     
T  34955076 cttgtgtaccattgggataccaatgttatataacattggccaatgaaggtgtgtcatatagcacttcagatgcatatcttttctctttcctctttagaca 34955175  T
Q  282 ttcttatgtggcatgccttcatt 304  Q
    ||| |||||| ||  ||||||||    
T  34955176 ttcctatgtgccacaccttcatt 34955198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 278
Target Start/End: Original strand, 39716023 - 39716124
Alignment:
Q  177 tagcgcttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctcttt 276  Q
    |||| ||||||| ||||| ||||| ||||  ||||||||||||  |||| | || ||| ||| |||||||||| |||||||| | || ||||||||||||    
T  39716023 tagcacttgtgtgccattggaataccaatgttatataacattggccaataacggggtgacacgtagcacttcaaatgcatatcttttctctttcctcttt 39716122  T
Q  277 ag 278  Q
    ||    
T  39716123 ag 39716124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 40280993 - 40280881
Alignment:
Q  223 aatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagaccttcttatgtggcatgccttcattaccccatatcatataaca 322  Q
    ||||||||| |||||||| |||||||||||  |||| | || | ||| ||||||| | |||| |||||||||  ||||||||   | |||| ||||||||    
T  40280993 aatgaaggtatgccacattgcacttcacatatatattttttctattttctctttaaatcttcctatgtggcacaccttcattgaacaatattatataaca 40280894  T
Q  323 ttgatatctcaat 335  Q
    |||||||| ||||    
T  40280893 ttgatatcacaat 40280881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 42273337 - 42273397
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatag 242  Q
    ||||||||||||| | ||| ||||  |||||||||||| |||||||| |||||||||||||    
T  42273337 cttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacatag 42273397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 46489823 - 46489763
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatag 242  Q
    ||||||||||||| | ||| ||||  |||||||||||| |||||||| |||||||||||||    
T  46489823 cttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccacatag 46489763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 53440712 - 53440664
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaagg 230  Q
    ||||||||||||||| ||| ||||  |||||||||||||||||||||||    
T  53440712 cttgtgtaccattaggataccaatgttatataacattgatcaatgaagg 53440664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 40280887 - 40280931
Alignment:
Q  198 atatcaatagtatataacattgatcaatgaaggtgtgccacatag 242  Q
    ||||||||  ||||||| |||| ||||||||||||||||||||||    
T  40280887 atatcaatgttatataatattgttcaatgaaggtgtgccacatag 40280931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 344
Target Start/End: Original strand, 37811094 - 37811256
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagacc 281  Q
    ||||||||||||| | ||| ||||  ||||||||||||  ||||||| ||||||||||||||| ||||||||||||| | || | ||||||||||||||     
T  37811094 cttgtgtaccattgggataccaatgttatataacattggccaatgaaagtgtgccacatagcagttcacatgcatattttttctatttcctctttagaca 37811193  T
Q  282 ttcttatgtggcatgccttcattaccccatatcatataacattgatatctcaatagtacacaa 344  Q
    ||||||||||||| |||||||||   | || | ||||||||||| |||| |||| ||||||||    
T  37811194 ttcttatgtggcacgccttcattgatcaatgttatataacattggtatcccaatggtacacaa 37811256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 347
Target Start/End: Original strand, 32453161 - 32453325
Alignment:
Q  183 ttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagacct 282  Q
    ||||||||||||  |||||||||  ||||||| |||  |||||||||  |||  |||||||||||||||||||||| |  | ||||| ||||||| || |    
T  32453161 ttgtgtaccattgaaatatcaatgttatataatattagtcaatgaagacgtgttacatagcacttcacatgcatattttatctcttttctctttacacat 32453260  T
Q  283 tcttatgtggcatgccttcattaccccatatcatataacattgatatctcaatagtacacaaatg 347  Q
    ||||||||| ||   |||||||   | || | |||||| |||||||| ||||| |||||||||||    
T  32453261 tcttatgtgtcacatcttcattggtcaatgttatataatattgatatttcaatggtacacaaatg 32453325  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 37811257 - 37811198
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacata 241  Q
    ||||||||||||| | ||| ||||  ||||||||||||||||||||||| ||||||||||    
T  37811257 cttgtgtaccattgggataccaatgttatataacattgatcaatgaaggcgtgccacata 37811198  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 32453322 - 32453264
Alignment:
Q  183 ttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacata 241  Q
    ||||||||||||  |||||||||| ||||||||||||| |||||||| |||| ||||||    
T  32453322 ttgtgtaccattgaaatatcaatattatataacattgaccaatgaagatgtgacacata 32453264  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 32018388 - 32018433
Alignment:
Q  214 acattgatcaatgaaggtgtgccacatagcacttcacatgcatata 259  Q
    |||||| || ||||||||||| |||||||||||||||||| |||||    
T  32018388 acattggtcgatgaaggtgtgtcacatagcacttcacatgtatata 32018433  T

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Target: scaffold0163 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 28033 - 28155
Alignment:
Q  222 caatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagaccttcttatgtggcatgccttcattaccccatatcatataac 321  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| |||  |||||||||   |||||||  || |||| |||||||    
T  28033 caatgaaggtgtgtcacatagcacttcacatgcatattttttatctttcctctttagatctttctatgtggcacatcttcattgaccaatattatataac 28132  T
Q  322 attgatatctcaatagtacacaa 344  Q
    || | ||||||||| ||||||||    
T  28133 atcggtatctcaatggtacacaa 28155  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 182 - 325
Target Start/End: Complemental strand, 34514599 - 34514456
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagacc 281  Q
    ||||||||||||| | ||| ||||  ||||||| ||||  |||||||| |||| |||||| |||||||||||||||| | || |||||||||||||||||    
T  34514599 cttgtgtaccattgggataacaatgttatataatattggccaatgaagatgtgtcacataacacttcacatgcatatcttttctctttcctctttagacc 34514500  T
Q  282 ttcttatgtggcatgccttcattaccccatatcatataacattg 325  Q
    ||| ||||| |||  | ||||||  || |||| |||||||||||    
T  34514499 ttcatatgtagcacactttcattgaccaatattatataacattg 34514456  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 5581278 - 5581359
Alignment:
Q  177 tagcgcttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatat 258  Q
    |||| ||||||||||||||| |||  |||  ||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  5581278 tagcacttgtgtaccattaggatactaatgttatataacattgaccaatgaaggtgtgccaaatagcacttcacatgcatat 5581359  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 18056028 - 18056104
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatat 258  Q
    ||||||||||| | | ||||||||  ||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  18056028 cttgtgtaccactgggatatcaatgttatataacattgaccaatgaaggtgtgtcacatagcacttcacatgcatat 18056104  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 47335324 - 47335404
Alignment:
Q  198 atatcaatagtatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttag 278  Q
    ||||||||  ||||||||||||  |||||| |||||||||| |||||||||||||| |||| | || ||||||||||||||    
T  47335324 atatcaatgttatataacattggccaatgagggtgtgccacgtagcacttcacatgtatatcttttctctttcctctttag 47335404  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 31953835 - 31953879
Alignment:
Q  208 tatataacattgatcaatgaaggtgtgccacatagcacttcacat 252  Q
    ||||||||||||| |||||||||||||||||||  ||||||||||    
T  31953835 tatataacattgaccaatgaaggtgtgccacatgacacttcacat 31953879  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 6223054 - 6223106
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtg 234  Q
    |||||||||||||| | |||||||  |||||| ||||||||||| ||||||||    
T  6223054 cttgtgtaccattaaagtatcaatgttatatatcattgatcaattaaggtgtg 6223106  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 31030252 - 31030146
Alignment:
Q  188 taccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagaccttctta 287  Q
    ||||||| ||||||||||  |||||||||||| ||||||||||| || |||||||||||| ||||| |||| | || | |||| ||||||||| ||| ||    
T  31030252 taccattggaatatcaatgttatataacattggtcaatgaaggtatgtcacatagcactttacatgaatatcttttctttttcttctttagactttcata 31030153  T
Q  288 tgtggca 294  Q
    |||||||    
T  31030152 tgtggca 31030146  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 344
Target Start/End: Original strand, 12800300 - 12800414
Alignment:
Q  228 aggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagaccttcttatgtggcatgccttcattaccccatatcatataacattgat 327  Q
    ||||||| |||||| |||||||||||||||||| ||  | ||| | ||||||||||| |||||||||  ||||||||| || || | ||||||||||| |    
T  12800300 aggtgtgtcacataacacttcacatgcatatatttt--ccttcttttttagaccttcctatgtggcacaccttcattagccaatgttatataacattggt 12800397  T
Q  328 atctcaatagtacacaa 344  Q
    ||| |||| ||||||||    
T  12800398 atcccaatggtacacaa 12800414  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 29879315 - 29879372
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccaca 239  Q
    ||||||| ||||| | ||| ||||  |||||||||||| |||||||||||||||||||    
T  29879315 cttgtgtgccattgggataccaatgttatataacattggtcaatgaaggtgtgccaca 29879372  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 12800415 - 12800355
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatag 242  Q
    ||||||||||||| | ||| ||||  ||||||||||||   ||||||||||||||||||||    
T  12800415 cttgtgtaccattgggataccaatgttatataacattggctaatgaaggtgtgccacatag 12800355  T

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Target: scaffold0464 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 6427 - 6503
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatat 258  Q
    ||||||||||||| | ||||||||  ||||||||||||  |||| ||||||||||||||||||||||||||| ||||    
T  6427 cttgtgtaccattgggatatcaatgttatataacattggccaataaaggtgtgccacatagcacttcacatgtatat 6503  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 344
Target Start/End: Original strand, 40530442 - 40530576
Alignment:
Q  210 tataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctctttagaccttcttatgtggcatgccttcattacccc 309  Q
    |||||||||  | |||||||| ||||| |||| |||||||||||||||| | || |||||  ||||||||||||| ||| |||||  |||||||||  |     
T  40530442 tataacattagttaatgaaggcgtgccgcataacacttcacatgcatatcttttctcttttttctttagaccttcctatatggcacaccttcattagtca 40530541  T
Q  310 atatcatataacattgatatctcaatagtacacaa 344  Q
    || | ||||||||||| |||||||||  |||||||    
T  40530542 atgttatataacattggtatctcaatgttacacaa 40530576  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 17495763 - 17495668
Alignment:
Q  182 cttgtgtaccattagaatatcaatagtatataacattgatcaatgaaggtgtgccacatagcacttcacatgcatatatgttatctttcctcttta 277  Q
    |||||||||||||   |||||||| ||  |||| |||| ||||||||  |||| ||| ||||||||||||||||||||| || |||||||||||||    
T  17495763 cttgtgtaccattgagatatcaatggtgcataatattggtcaatgaaaatgtgtcacgtagcacttcacatgcatatattttctctttcctcttta 17495668  T

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