View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_high_10 (Length: 509)
Name: NF14145_high_10
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 12 - 492
Target Start/End: Original strand, 41010522 - 41011002
Alignment:
| Q |
12 |
tatactcactcacatagacaacgtgttaactatttaaattgttgtcgaactttgacgtcatttgtgtgtcaaaatctcattttcctacattaaaatgcca |
111 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41010522 |
tatagtcacttacatagacaacgtgttaactatttaaattgttgtcgaactttgacgtcatttgtgtgtcaaaatctcattttcctacattaaaatgcca |
41010621 |
T |
|
| Q |
112 |
ataaaaaacaaaactctttccttatttagaacaaagaaaacagaacaggaacctcatgttcctgaattaattgattcaaattggcactctacatacatga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41010622 |
ataaaaaacaaaactctttccttatttagaacaaagaaaacagaacaggagcctcatgttcctgaattaattgattcaaattggcactctacatacatga |
41010721 |
T |
|
| Q |
212 |
cacttaatcaacacatcaatcaactatatatatcagcatagctgttagaacttaaaagctagtataatatatgaactaatgtctcaagtaaaattaaagg |
311 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41010722 |
cacttaatcaacacatgaatcaactatatatatcagcatagctgttagaacttaaaagctagtataatatatgaactaatgtctcaagtaaaattaaagg |
41010821 |
T |
|
| Q |
312 |
atgataaatttctcatgtcagacacaaacaaacaccttttcattatgtgtggagctagcaaaactaagaacactaaggaaaagatgttcattacatggaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41010822 |
atgataaatttctcatgtcagacacaaacaaacaccttttcattatgtgtggagctagcaaaactaagaacactaaggaaaagatgttcattacatggaa |
41010921 |
T |
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| Q |
412 |
tgcaaagtttagaatctgcaatgaaatcatattcttctcgagcttgttccaacaaggccttgaaaagtggatgatggagta |
492 |
Q |
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| T |
41010922 |
tacaaagtttagaatctgcaatgaaatcatattcttctcgagcttgttccaacaaggccttgaaaagtggatgatggagta |
41011002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 381 - 487
Target Start/End: Complemental strand, 28118978 - 28118872
Alignment:
| Q |
381 |
acactaaggaaaagatgttcattacatggaatgcaaagtttagaatctgcaatgaaatcatattcttctcgagcttgttccaacaaggccttgaaaagtg |
480 |
Q |
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||||| |||||||||||||||| ||| ||||| || ||||| ||||| || ||||||||||| |||||| ||||||| ||||||||||| ||||| |||| |
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| T |
28118978 |
acacttaggaaaagatgttcatgacaaggaatacatagttttgaatcagccatgaaatcatactcttcttgagcttgatccaacaaggctttgaagagtg |
28118879 |
T |
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| Q |
481 |
gatgatg |
487 |
Q |
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||||||| |
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| T |
28118878 |
gatgatg |
28118872 |
T |
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