View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_high_13 (Length: 437)
Name: NF14145_high_13
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 6753445 - 6753021
Alignment:
| Q |
1 |
tatcctttggtatcctgcttctttcctgtaccaagtaaatgaactaccagtagcaccaagatcaagcaaccgacatttttcaatcatatcagcatattta |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6753445 |
tatcctttggtatcctgcttctttcctataccaagtaaatgaactaccagtagcaccaagatcaagcaaccgacatttttcaatcatatcagcatattta |
6753346 |
T |
|
| Q |
101 |
gtagcacctgatagcgaatactctcctccacgcacttctgaaggaagaagaatttcattgaaatcacccataagaagccaagggccattaagatgaggtc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6753345 |
gtagcacctgatagtgaatactctcctccacgcacttctgaaggaagaagaatttcattgaaatcacccataagaagccaagggccattaagatgaggtc |
6753246 |
T |
|
| Q |
201 |
gtaaggaattcaagtaggaccaaagatggtcacgatttgtaacctgagggctagcataaatagttgacaagtaccaccttactctatccttttctagagc |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6753245 |
gtaaggaattcaagtagggccaaagatggtcacgatttgtaacctgagggctagcataaatagttgacaagtaccaccttactctatccttttctagagc |
6753146 |
T |
|
| Q |
301 |
tatagtgatagattgaaaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6753145 |
tatagtgatagattgaaaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttca |
6753046 |
T |
|
| Q |
401 |
gaaattgcacaatcctcatagccta |
425 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
6753045 |
gaaattgcacaatcctcatagccta |
6753021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 1811089 - 1811513
Alignment:
| Q |
1 |
tatcctttggtatcctgcttctttcctgtaccaagtaaatgaactaccagtagcaccaagatcaagcaaccgacatttttcaatcatatcagcatattta |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1811089 |
tatcctttggtatcctgctcctttcctgtaccaagtaaatgaactaccagtagcaccaagatcaagcaaccgatatttttcaatcatatcagcatattta |
1811188 |
T |
|
| Q |
101 |
gtagcacctgatagcgaatactctcctccacgcacttctgaaggaagaagaatttcattgaaatcacccataagaagccaagggccattaagatgaggtc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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|
| T |
1811189 |
gtagcacctgatagtgaatactctcctccacgtacttctgaaggaagaagaatttcattgaaatcactcataagaagccaaggaccattaagatgaggtc |
1811288 |
T |
|
| Q |
201 |
gtaaggaattcaagtaggaccaaagatggtcacgatttgtaacctgagggctagcataaatagttgacaagtaccaccttactctatccttttctagagc |
300 |
Q |
| |
|
||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1811289 |
gtaagcaattcaaataggaccaaagatgatcacgatttgtaacctgagggctagcataaatagttgacaagtaccaccttactctatccttttctagagc |
1811388 |
T |
|
| Q |
301 |
tatagtgatagattgaaaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1811389 |
tatagtgatagattgaaaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatacctccagagtgtccacgagcttca |
1811488 |
T |
|
| Q |
401 |
gaaattgcacaatcctcatagccta |
425 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
1811489 |
gaaattgcacaattctcatagccta |
1811513 |
T |
|
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