View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_high_14 (Length: 418)
Name: NF14145_high_14
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 86 - 281
Target Start/End: Original strand, 26895489 - 26895683
Alignment:
| Q |
86 |
agatatgaatacctataggggtcactgtcattacaaatggaaaaaataaaatgttagttgcaatccatgattttgatgnnnnnnnnnnnnnnnnnnnnna |
185 |
Q |
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| T |
26895489 |
agatatgaatacctataggggtcactgtcattacaaatggaaaaaataagatgttagttgcagtccatgattttgatgtttttttatattttattttata |
26895588 |
T |
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| Q |
186 |
aaacgttaagttgttggtagcagtcatgacttgctctaattgtgtaatnnnnnnnttgtacttgtttgataatgtagttgagtgtttttactactt |
281 |
Q |
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| T |
26895589 |
aaacgttaagttgttggtggcagtcatgacttcctctaattgtgtaataaaaaaattgtacttg-ttgataatgtagttgagtgtttttactactt |
26895683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 26895767 - 26895804
Alignment:
| Q |
365 |
ttagtaaatagaaaacctcttatgtttgagtaaatttt |
402 |
Q |
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| T |
26895767 |
ttagtaaatagaaaacctcttatgtttgggtaaatttt |
26895804 |
T |
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