View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_high_15 (Length: 414)
Name: NF14145_high_15
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_high_15 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 31033657 - 31034070
Alignment:
| Q |
1 |
tgcttcaaagtcccatagtacattgcgcaacaaaacaattccaggtcctccacaacaaaaccagaatcaaaatacacttcggtgaagactaagcagctga |
100 |
Q |
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| T |
31033657 |
tgcttcaaagtcccatagtacattgcgcaacaaaacaattccaggtcctccacaacaaaacgagaatcaaaatacacttcggtgaagactaagcagctga |
31033756 |
T |
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| Q |
101 |
ctgactacacaaggatcacacacaaa---------------aaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatc |
185 |
Q |
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| T |
31033757 |
ctgactacacaaggatcacacaccaacactaaacactccaaaaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatc |
31033856 |
T |
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| Q |
186 |
cctgactagaatgccagcctgaagcagatatgagatttctacaccagatctccccttatcttctgacttgacgccaactcctaaaaaaggtagagggtta |
285 |
Q |
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| T |
31033857 |
cctgactagaatgccagcctgaagcagatatgagatttctacaccagatctcccctaatcttctgacttgacgccaactcctaaaaaaggtaaagggtta |
31033956 |
T |
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| Q |
286 |
gtccacgactttgatattgaatatccaaaccctgatgattatgaccttatccagtttcaggaaagcatttaccttttccgaaatagtatcggttgaaaca |
385 |
Q |
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| T |
31033957 |
gtccacgacttcgatattgaatatccaaaccctgatgattatgaccttatccagtttcaggaaagcatttaccttttccgaaatagtatcggttgaaaca |
31034056 |
T |
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| Q |
386 |
cttttatcctgaat |
399 |
Q |
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| T |
31034057 |
cttttatcctgaat |
31034070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 310
Target Start/End: Complemental strand, 31098170 - 31097993
Alignment:
| Q |
133 |
tcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagatatgagatttctacaccag |
232 |
Q |
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| T |
31098170 |
tcaagacattgcattgccttcctcccacttcagaagtaatgattttaactatccctgactacaatgccagcctgagtcagatacgagatatttacacaaa |
31098071 |
T |
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| Q |
233 |
atctccccttatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacgactttgatattgaatatc |
310 |
Q |
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| T |
31098070 |
acctcccctagtcttctgactcgatgccaagtcctaaacaaactaaaggtttagtccaccactgcgatattgtatatc |
31097993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 355
Target Start/End: Complemental strand, 31093302 - 31093211
Alignment:
| Q |
264 |
tcctaaaaaaggtagagggttagtccacgactttgatattgaatatccaaaccctgatgattatgaccttatccagtttcaggaaagcattt |
355 |
Q |
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| T |
31093302 |
tcctaaacaagctagagggttagtccactaatgtgatattgcatatccatatcccaatgattttgatctcatccagttccgggaaagcattt |
31093211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 28 - 399
Target Start/End: Complemental strand, 31319 - 30933
Alignment:
| Q |
28 |
caacaaaacaattccaggtcctccacaacaaaaccagaatcaaaatacacttcggtgaagactaagcagctgactgactacacaaggatcacacacaaa- |
126 |
Q |
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| T |
31319 |
caacaaaacaattccaggtcctccacaacaaaaccagaatcaaaatacacttcggtgaagactaagcagctgactgactacacaaggatcacacaccaac |
31220 |
T |
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| Q |
127 |
--------------aaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcag |
212 |
Q |
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| T |
31219 |
actaaacactccaaaaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcag |
31120 |
T |
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| Q |
213 |
atatgagatttctacaccagatctccccttatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacgactttgatattgaatatcca |
312 |
Q |
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| T |
31119 |
aaatgggatttctacaccagatctcccctaatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacaactttgatattgcatatcca |
31020 |
T |
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| Q |
313 |
aaccctgatgattatgaccttatccagtttcaggaaagcatttaccttttccgaaatagtatcggttgaaacacttttatcctgaat |
399 |
Q |
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|||| ||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||| ||||||||||||| |
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| T |
31019 |
aacctcgatgattttgaccttatccagtttcaggaaagcacttaccttttctgaaatagtatcggtcgaaacatttttatcctgaat |
30933 |
T |
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