View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_high_17 (Length: 409)
Name: NF14145_high_17
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 38854756 - 38854897
Alignment:
| Q |
16 |
aaatgaatggaagagtgatagagaagtgtagtacaagggctagatatatgttaattcccaaaattcgtaagtcatgttcaagagtaaacggtttgtaatt |
115 |
Q |
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| T |
38854756 |
aaatgaatggaagagtgatagagaagtgtagtacaagggctagatatatgttaattcccaaaattcgtaagtcatgttcaagagtaaacggtttgtaatt |
38854855 |
T |
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| Q |
116 |
tccggtgaagatattctagaaaatttgagatacaatccaaaat |
158 |
Q |
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| T |
38854856 |
tccggcgaaga-attctagaaaatttgagatacaatccaaaat |
38854897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 238 - 396
Target Start/End: Original strand, 38854964 - 38855121
Alignment:
| Q |
238 |
tatgttcgcaagagaaaagatatgctcgactaattggacctctgtgttaactgtgcttaattcctaa-catattcaagagnnnnnnnntatgtgcttccc |
336 |
Q |
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| T |
38854964 |
tatgttcacaagagaaaagatatgctcgactaattggacctctgtgttaactgtgcttaattcctaaacatattcaagagaaaaaa--tatgtgcttccc |
38855061 |
T |
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| Q |
337 |
aacatactcgttccatatattgctattttatcttccatgttttgtcttcttccattcttc |
396 |
Q |
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| T |
38855062 |
aacatactcgttccatatattgctattttatcttccatgttttgtcttcttccattcttc |
38855121 |
T |
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