View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14145_high_19 (Length: 400)

Name: NF14145_high_19
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14145_high_19
NF14145_high_19
[»] chr7 (15 HSPs)
chr7 (1-384)||(4864752-4865135)
chr7 (120-381)||(4637684-4637942)
chr7 (57-382)||(4711028-4711350)
chr7 (237-380)||(4654327-4654473)
chr7 (100-380)||(4673534-4673814)
chr7 (237-382)||(4845130-4845278)
chr7 (237-384)||(4782950-4783100)
chr7 (237-384)||(4815379-4815529)
chr7 (258-384)||(4644519-4644648)
chr7 (256-380)||(4696318-4696442)
chr7 (120-208)||(4644692-4644780)
chr7 (138-196)||(4845037-4845095)
chr7 (121-210)||(4654494-4654583)
chr7 (122-210)||(4696190-4696278)
chr7 (303-382)||(4663525-4663604)


Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 4865135 - 4864752
Alignment:
Q  1 tgaccatttcaaagttgtcaatttcacagaaatttcccttcctacctctcaatgtttataagaataaataaatgtaacttctagcattccaaacctcaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4865135 tgaccatttcaaagttgtcaatttcacagaaatttcccttcctacctttcaatgtttataagaataaataaatgtaacttctagcattccaaacctcaac 4865036  T
Q  101 aacaacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4865035 aacaacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctcc 4864936  T
Q  201 ttttcctattcnnnnnnnnagtagctaaatcaatagcatacagccctgatttcagtttagccatcggttgtggctccacaacaaatactaccttagataa 300  Q
    |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4864935 ttttcctattcttttttttagtagctaaatcaatagcatacagccctgatttcagtttagccatcggttgtggctcctcaacaaatactaccttagataa 4864836  T
Q  301 acgaatttgggttggtgataatattgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaac 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4864835 acgaatttgggttggtgataatattgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaac 4864752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 120 - 381
Target Start/End: Complemental strand, 4637942 - 4637684
Alignment:
Q  120 cttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctccttttcctattcnnnnnnnn 219  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||||| ||  ||||||| ||||||| | ||||||| ||| |||| ||| |             
T  4637942 cttcttcactctcttctcacacagctatggcaaactccataaacaaaaacatttacacaaaaatcagcatactatccctctttttgctacttttcccttt 4637843  T
Q  220 agtagctaaatcaatagcatacagccctgatttcagtttagccatcggttgtggctccacaaca---aatactaccttagataaacgaatttgggttggt 316  Q
    ||| ||||| |||      |||| |||||||| || ||||||||||  ||||||||||  |||    |||||| ||||||||||||||||||||||||||    
T  4637842 agttgctaactca------tacaaccctgattacaatttagccatcaattgtggctccttaaccgacaatactgccttagataaacgaatttgggttggt 4637749  T
Q  317 gataatattgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaa 381  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  4637748 gataatattaataacaaaaatctctttactttcattgaaccaaaaaccacaaacccatcttttaa 4637684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 57 - 382
Target Start/End: Original strand, 4711028 - 4711350
Alignment:
Q  57 tataagaataaataaatgtaacttctagcattccaaacctcaacaacaacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactc 156  Q
    ||||| |||||||||||| |||||| ||||| | ||  |||||||| || |||| |||| |  ||||||||| || || ||||| |||||||||||||||    
T  4711028 tataacaataaataaatgcaacttcaagcatcctaacactcaacaagaaaaacaaaatctactcttcttcactctattttcacataactatggcaaactc 4711127  T
Q  157 gataaacaagaaactttacactaaaatcaccctactatctctccttttcctattcnnnnnnnnagtagctaaatcaatagcatacagccctgatttcagt 256  Q
     |||||| | ||| || |||||||||| |||||||||||||||  ||| || ||         ||| ||||| |||      |||| |||||||| || |    
T  4711128 cataaacgaaaaatttcacactaaaattaccctactatctctctatttgctcttgttccctctagttgctaactca------tacaaccctgattacaat 4711221  T
Q  257 ttagccatcggttgtggctccacaacaaatactac---cttagataaacgaatttgggttggtgataatattgataacaaaaatctctttactttcattg 353  Q
    |||||||||  |||||||| | ||||||| |||||   ||||||||  ||||||||||||||||||||||||||||||  |||||||||||| |||||||    
T  4711222 ttagccatcaattgtggcttctcaacaaacactactgccttagatagtcgaatttgggttggtgataatattgataactcaaatctctttaccttcattg 4711321  T
Q  354 aacaaaaaaccacaaacccatctcttaaa 382  Q
    ||| |||||||||||||||||||||||||    
T  4711322 aaccaaaaaccacaaacccatctcttaaa 4711350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 237 - 380
Target Start/End: Complemental strand, 4654473 - 4654327
Alignment:
Q  237 catacagccctgatttcagtttagccatcggttgtggctccacaacaaa---tactaccttagataaacgaatttgggttggtgataatattgataacaa 333  Q
    |||||| |||||||| || |||||| |||| ||||||||||  |||| |   ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  4654473 catacaaccctgattacaatttagctatcgattgtggctccctaacagacactactaccttagataaacgaatttggattggtgagaatattgataacaa 4654374  T
Q  334 aaatctctttactttcattgaacaaaaaaccacaaacccatctctta 380  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||||    
T  4654373 aaatatctttactttcattgaaccaaaaaccacgaacccatctctta 4654327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 100 - 380
Target Start/End: Complemental strand, 4673814 - 4673534
Alignment:
Q  100 caacaacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctc 199  Q
    ||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||| |||||||| |||  |||||| ||||||||||||||| | |||    
T  4673814 caacaacaacagaatcaacccttcttcaccctcttctcacacagctatggcaaactccataaacaaaaaaaattacacaaaaatcaccctactaccgctc 4673715  T
Q  200 cttttcctattcnnnnnnnnagtagctaaatcaatagcatacagccctgatttcagtttagccatcggttgtggctccacaaca---aatactaccttag 296  Q
     |||| || ||         ||| ||||  |      ||||||  ||   || || ||||||||||  |||||| ||| |||||   ||| ||||||| |    
T  4673714 attttgctcttgttccctctagttgctacct------catacaaaccaatttacaatttagccatcaattgtggttcctcaacaaacaatgctaccttcg 4673621  T
Q  297 ataaacgaatttgggttggtg---ataatattgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctctta 380  Q
    |||| ||||| ||||||||||   |||||||| |||||| ||||||||||||||||||||||| |||||||||| ||||||||||||    
T  4673620 ataaccgaatgtgggttggtgataataatattaataacacaaatctctttactttcattgaaccaaaaaccacatacccatctctta 4673534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 237 - 382
Target Start/End: Original strand, 4845130 - 4845278
Alignment:
Q  237 catacagccctgatttcagtttagccatcggttgtggctccacaacaaatacta---ccttagataaacgaatttgggttggtgataatattgataacaa 333  Q
    |||||| |||||||| || ||||||||||  |||||| ||| ||||||| | |    |||||||||||||||||||| ||||||||||||||||||||      
T  4845130 catacaaccctgattacaatttagccatcaattgtggttcctcaacaaacaatgttgccttagataaacgaatttggattggtgataatattgataactc 4845229  T
Q  334 aaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaa 382  Q
    |||||||||||| |||||||||| |||||||||||| |||||| |||||    
T  4845230 aaatctctttaccttcattgaaccaaaaaccacaaatccatcttttaaa 4845278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 384
Target Start/End: Original strand, 4782950 - 4783100
Alignment:
Q  237 catacagccctgatttcagtttagccatcggttgtggctccacaacaaatactac---cttagataaacgaatttgggttggtgataatattgataacaa 333  Q
    |||||| |||||||| ||||||||||||| ||||||||||| ||||||| |||||   ||| |||  |||||||||||||| |||||| |||||||||      
T  4782950 catacaaccctgattacagtttagccatcagttgtggctcctcaacaaacactactgcctttgatggacgaatttgggttgttgataacattgataactc 4783049  T
Q  334 aaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaac 384  Q
     ||||||||| | |||||||||| |||||  ||||||||||||||||||||    
T  4783050 taatctcttttccttcattgaaccaaaaaatacaaacccatctcttaaaac 4783100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 384
Target Start/End: Original strand, 4815379 - 4815529
Alignment:
Q  237 catacagccctgatttcagtttagccatcggttgtggctccacaacaaatactac---cttagataaacgaatttgggttggtgataatattgataacaa 333  Q
    |||||| |||||||| ||||||||||||| ||||||||||| ||||||| |||||   ||| |||  |||||||||||||| |||||| |||||||||      
T  4815379 catacaaccctgattacagtttagccatcagttgtggctcctcaacaaacactactgcctttgatggacgaatttgggttgttgataacattgataactc 4815478  T
Q  334 aaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaac 384  Q
     ||||||||| | |||||||||| |||||  ||||||||||||||||||||    
T  4815479 taatctcttttccttcattgaaccaaaaaatacaaacccatctcttaaaac 4815529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 384
Target Start/End: Complemental strand, 4644648 - 4644519
Alignment:
Q  258 tagccatcggttgtggctccacaacaaatactac---cttagataaacgaatttgggttggtgataatattgataacaaaaatctctttactttcattga 354  Q
    |||||||  ||||||||||| |||| || |||||   ||||||||  |||||||||||||||||||||| |||||||| ||| |||||||||||||||||    
T  4644648 tagccattagttgtggctcctcaacgaacactactgccttagatagtcgaatttgggttggtgataataatgataacacaaaactctttactttcattga 4644549  T
Q  355 acaaaaaaccacaaacccatctcttaaaac 384  Q
    || ||||||||| || ||||||| ||||||    
T  4644548 accaaaaaccactaatccatctcctaaaac 4644519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 380
Target Start/End: Original strand, 4696318 - 4696442
Alignment:
Q  256 tttagccatcggttgtggctccacaacaaatactaccttagataaacgaatttgggttggtgataatattgataacaaaaatctctttactttcattgaa 355  Q
    ||||||||||  |||||||||| || || | |||||||| || |||||||| |||||||||||||||| |||||||| ||| |||||| | |||| ||||    
T  4696318 tttagccatcaattgtggctcctcatcagacactaccttcgacaaacgaatatgggttggtgataataatgataacacaaaactcttttccttcaatgaa 4696417  T
Q  356 caaaaaaccacaaacccatctctta 380  Q
    | ||||||||||||| |||||||||    
T  4696418 ccaaaaaccacaaacacatctctta 4696442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 4644780 - 4644692
Alignment:
Q  120 cttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctccttttccta 208  Q
    ||||||||| ||||||||||||||||||||||||| | |||||||| |||  |||||| ||||||| | |||| |||||| |||| |||    
T  4644780 cttcttcactctcttctcacacaactatggcaaacaccataaacaaaaaaaattacacaaaaatcagcatactttctctcattttgcta 4644692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 4845037 - 4845095
Alignment:
Q  138 acacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatct 196  Q
    ||||||||||| ||||||| |||||||| ||| || |||||||||||||||||||||||    
T  4845037 acacaactatgccaaactccataaacaaaaaatttcacactaaaatcaccctactatct 4845095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 4654583 - 4654494
Alignment:
Q  121 ttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctccttttcctatt 210  Q
    |||||||| |||||||||||||  |||||||||||| |||||||| ||  ||||||| ||||| | | ||||||||||| |||| |||||    
T  4654583 ttcttcacactcttctcacacagatatggcaaactccataaacaaaaacatttacacaaaaatgagcatactatctctctttttgctatt 4654494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 4696190 - 4696278
Alignment:
Q  122 tcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctccttttcctatt 210  Q
    ||||||| ||||| ||| | ||||||||||||||| | |||||| ||| || |||||||||||| ||| ||||||||| |||| |||||    
T  4696190 tcttcactctcttatcagagaactatggcaaactccagaaacaaaaaatttcacactaaaatcatcctgctatctctcattttgctatt 4696278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 382
Target Start/End: Complemental strand, 4663604 - 4663525
Alignment:
Q  303 gaatttgggttggtgataatattgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaa 382  Q
    ||||||||||||||||||||| |||||||| | | |||||| ||||| |||| | |||||| | ||| ||||||||||||    
T  4663604 gaatttgggttggtgataataatgataacacagaactcttttctttccttgagccaaaaacaaaaaatccatctcttaaa 4663525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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