View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_high_20 (Length: 391)
Name: NF14145_high_20
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 48357223 - 48357604
Alignment:
| Q |
1 |
taggggaacatggcgtggatttgatgtggcagtgaagtgcatttcacctgaattctttcgcacaaatgcaaacggtgttgaattctttgctcaagaggtt |
100 |
Q |
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| T |
48357223 |
taggggaacatggcgtggatttgatgtggcagtgaagtgcatttcacctgaattctttcgcacaaatgcaaacggtgttgaattctttgctcaagaggtt |
48357322 |
T |
|
| Q |
101 |
gaaactctctcaaagcaacgccacaggtttgtgcttaatctaatgggtgcatgtcttgaccctcctaatcatgcttgggttgttactgaatatctaagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48357323 |
gaaactctctcaaagcaacgccacaggtttgtgcttaatctaatgggtgcatgtcttgaccctcctaatcatgcttgggtggttactgaatatctaagca |
48357422 |
T |
|
| Q |
201 |
ccacacttaaggagtggctttatggtcctggcaaaagacgcagagatagaattgtgccacttcctcctttcaaagaaagactaacaagggtcatagagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48357423 |
ccacacttaaggagtggctttatggtcctggcaaaagacgcagagatagaattgtgccacttcctcctttcaaagaaagactaacaagggtcatagagat |
48357522 |
T |
|
| Q |
301 |
agcccaagctatgcagtatcttcatgagcaaaagcccaaaattattcaccgtgacttgaagcccagcaacatattcttggac |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
48357523 |
agcccaagctatgcagtatcttcatgagcaaaagcccaaaattattcaccgtgacttgaagcccagcaacattttcatggac |
48357604 |
T |
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