View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_high_24 (Length: 348)
Name: NF14145_high_24
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 111 - 285
Target Start/End: Complemental strand, 45909337 - 45909165
Alignment:
| Q |
111 |
gatccattataatgtcagtctgcgttattgacaatggtccgtttgtaggatactattcgtgtattagtcggatgcagctttagaagctttgacgttcaag |
210 |
Q |
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| T |
45909337 |
gatccattataatgtcagtctgcgttattgacaatggtccgtttgtaggatactattcgtgtattagtcggatgcagctttagaagctttgacgttcaag |
45909238 |
T |
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| Q |
211 |
ccaaatgttatattggtgctggagattgaagtgccaaattttgtttatgtatgtatttctcatgttatttaatga |
285 |
Q |
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| T |
45909237 |
cctaatgttatattggtgctggagattgaagtgccaaattttgtttatgtatgtattttt--tgttatttaatga |
45909165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 45909474 - 45909371
Alignment:
| Q |
9 |
attattctttataatattcatttgacttcttgcttcgtacatgagccacatttgacctacaggagtctggttgaactttacaatccttcagatgcaagta |
108 |
Q |
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| T |
45909474 |
attattctttgtaagattcatttgacttcttgcttcttacatgagccatatttgacctacaggagtctggtggaactttacaatccttcagatgcaagta |
45909375 |
T |
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| Q |
109 |
tgga |
112 |
Q |
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|||| |
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| T |
45909374 |
tgga |
45909371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 278 - 331
Target Start/End: Complemental strand, 45909140 - 45909087
Alignment:
| Q |
278 |
tttaatgaaatgtagtctgattgtctgactttgttaaattcatttagatcaaag |
331 |
Q |
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| T |
45909140 |
tttaatgaaatgtcgtcttattgtctgactttgttaaattcatttagatcaaag |
45909087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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