View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_high_27 (Length: 343)
Name: NF14145_high_27
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_high_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 38730601 - 38730279
Alignment:
| Q |
19 |
atgtcccctagtccatgaatgttttctttaaaagaattgattttaccatcnnnnnnntattagtggcatagattgctacatgattgcgttccatacatct |
118 |
Q |
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| T |
38730601 |
atgtcccctagtccatgaatgttttctttaaaagaattgattttacgatccaaaaaatattagtggcatagattgctacatgattgtgttccatacatct |
38730502 |
T |
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| Q |
119 |
ataattcattgcgaatatcattacacaaaattcatttaaaaatgaatatatattaatatattccgcaataatccttattttaaaaagtatttcatctttn |
218 |
Q |
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| T |
38730501 |
ataattcattgcgaatatcattacacaa--ttcatttaaaaatgaatatatattaatatattccgtaataatccttattttaaaaagtatttcatcttt- |
38730405 |
T |
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| Q |
219 |
nnnnnnnnnnnnnntaaagttgagtttttatagaaattttccataaaatattcggtgtgactgtgctgatgaccannnnnnnnaatcttgaccaataaat |
318 |
Q |
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| T |
38730404 |
aaaaaaaaaaaaattcaagttgagtttttatagaaattttccataaaatattcggtgtgactgtgctgatgaccattttttttaatcttgaccaataaat |
38730305 |
T |
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| Q |
319 |
atttgtggagtttat-attccaacca |
343 |
Q |
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||||||||||||||| |||||||||| |
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| T |
38730304 |
atttgtggagtttatcattccaacca |
38730279 |
T |
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