View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14145_high_3 (Length: 851)

Name: NF14145_high_3
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14145_high_3
NF14145_high_3
[»] chr8 (18 HSPs)
chr8 (420-836)||(30649095-30649511)
chr8 (12-355)||(30648690-30649030)
chr8 (420-813)||(26089440-26089824)
chr8 (161-355)||(26089181-26089375)
chr8 (164-306)||(14727714-14727856)
chr8 (130-269)||(27714265-27714404)
chr8 (164-307)||(29552745-29552888)
chr8 (163-307)||(15329808-15329952)
chr8 (163-307)||(15510177-15510321)
chr8 (163-307)||(28865902-28866046)
chr8 (160-291)||(28693166-28693298)
chr8 (12-70)||(14727553-14727611)
chr8 (20-70)||(26089061-26089111)
chr8 (155-252)||(24509272-24509369)
chr8 (12-66)||(15329657-15329711)
chr8 (12-66)||(15510026-15510080)
chr8 (12-66)||(28865754-28865808)
chr8 (11-52)||(31073808-31073849)
[»] chr7 (5 HSPs)
chr7 (160-267)||(6610910-6611017)
chr7 (704-812)||(6626931-6627038)
chr7 (165-307)||(17292620-17292762)
chr7 (16-67)||(6611092-6611143)
chr7 (438-487)||(6610681-6610730)
[»] chr3 (2 HSPs)
chr3 (155-307)||(4819858-4820010)
chr3 (13-66)||(4819716-4819769)
[»] chr1 (2 HSPs)
chr1 (160-344)||(26086364-26086548)
chr1 (15-70)||(26086638-26086693)


Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 420 - 836
Target Start/End: Original strand, 30649095 - 30649511
Alignment:
Q  420 taccatatggaaaaatatgctttctagtgggttctccaatgggttggtttaccgctagttatttattttctatgtggaggatatcccctacatatgtcaa 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30649095 taccatatggaaaaatatgctttctagtgggttctccaatgggttggtttaccgctagttatttattttctatgtggaggatatcccctacacatgtcaa 30649194  T
Q  520 ttccgtgattttattagtcctttttggttcaattctgttacccatggtgattgacgtcattgttggagtgtgcacacggtcacggcttaaacacagaatt 619  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  30649195 ttccgtgattttattcgtcctttttggttcaattctgttacccatggtgattgacgtcattgttggagtgtacagacggtcacggcttaaacacagaatt 30649294  T
Q  620 gctaagagatttaataagatagtcaaagcattgtttcaataggagaaacatcaacaaaggttatggacattggtcatatagatgatgactgctaagatct 719  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30649295 gctaagatatttaatatgatagtcaaagcattgtttcaataggagaaacatcaacaaaggttatggacattggtcatatagatgatgactgctaagatct 30649394  T
Q  720 ctgtgactcaaaccacttatggccgaattcacaaccaataatatcgatctcaacgttgatttgtaattttacttgtcattgttatctttgtttctattca 819  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30649395 ctgtgactcaaaccacttatgaccgaattcacaaccaataatatcgatctcaacgttgatttgtaattttacttgtcattgttatctttgtttctgttca 30649494  T
Q  820 accttagcaaatagtga 836  Q
    |||||||||||||||||    
T  30649495 accttagcaaatagtga 30649511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 12 - 355
Target Start/End: Original strand, 30648690 - 30649030
Alignment:
Q  12 cagagatcaagagtatattattaagtgttggagcaaaacctagcttggaagtcactgattatccatcatttgatcatagaataagatcaaagatcacaat 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||  ||| |||||||||||||||||||||||||||||     
T  30648690 cagagatcaagagtatattattaagtgttggaacaaaacctagctcagaagtcactgattatcccacatgtgatcatagaataagatcaaagatcacaac 30648789  T
Q  112 tataggtgctctgggaatttatatagatcgcattacaagagacatattagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgcc 211  Q
    |||||||||| ||  |||||||||| ||||||||| | |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30648790 tataggtgctgtgacaatttatataaatcgcattagaggagatatatcagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgcc 30648889  T
Q  212 atctatcaatcaggattgagtccccctggtggaatttatcaggttagtgctggtgacactaacacgaacatcacttcctccaattttaccatttctgccc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  30648890 atctatcaatcaggattgagtccccctggtggaatttatcaggttagtgctggtgacactaacacgaacatcacttcctccaattttaccatttctgc-- 30648987  T
Q  312 acccaggaaatgctgggaaatcagttttgtcagggtatgaattc 355  Q
     |||||||||||||||||||||||| |||||||| |||||||||    
T  30648988 -cccaggaaatgctgggaaatcagtcttgtcaggttatgaattc 30649030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 420 - 813
Target Start/End: Original strand, 26089440 - 26089824
Alignment:
Q  420 taccatatggaaaaatatgctttctagtgggttctccaatgggttggtttaccgctagttatttattttctatgtggaggatatcccctacatatgtcaa 519  Q
    ||||||||||||||||| | |||||||| |  ||||||||| | ||| |||||| ||| ||||||||||||||||||||||||||||||||| |||||||    
T  26089440 taccatatggaaaaatagggtttctagtagcctctccaatgagatggcttaccgttagctatttattttctatgtggaggatatcccctacacatgtcaa 26089539  T
Q  520 ttccgtgattttattagtcctttttggttcaattctgttacccatggtgattgacgtcattgttggagtgtgcacacggtcacggcttaaacacagaatt 619  Q
    |||| | ||||||||  |||||||| ||||| || ||||| |||||||||||||||||||||||||||||| ||       | |||||||||||||||||    
T  26089540 ttccattattttattcatcctttttagttcatttatgttagccatggtgattgacgtcattgttggagtgtaca------taaggcttaaacacagaatt 26089633  T
Q  620 gctaagagatttaataagatagtcaaagcattgtttcaataggagaaacatcaacaaaggttatggacattggtcatatagatgatg--ac--tg-ctaa 714  Q
    ||||||| |||||||| ||||||  |||| |||||  ||||||||||||||||| |||| ||        |||||||||||||||||  ||  || |||     
T  26089634 gctaagatatttaatatgatagt-taagctttgttgaaataggagaaacatcaataaagctt-------gtggtcatatagatgatggtacgatgactac 26089725  T
Q  715 gatctctgtgactcaaaccacttatggccgaattcacaaccaataatatcgatctcaacgttgatttgtaattttacttgtcattgttatctttgtttc 813  Q
    |    |||  ||| |||| |||  |||||||||||||||||||||||||||| || |||||||||||||||||||  ||||||||||||||||||||||    
T  26089726 ggagactgcaactgaaacaactgctggccgaattcacaaccaataatatcgaccttaacgttgatttgtaattttcattgtcattgttatctttgtttc 26089824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 161 - 355
Target Start/End: Original strand, 26089181 - 26089375
Alignment:
Q  161 gaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtg 260  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| |||||||||||||||||||||    
T  26089181 gaggagcaacgtaacagttggttgatagttgcgactcttgttgcaactgcgatttatcaatcaggattgagtccccctagtggaatttatcaggttagtg 26089280  T
Q  261 ctggtga---cactaacacgaacatcacttcctccaattttaccatttctgcccacccaggaaatgctgggaaatcagttttgtcagggtatgaattc 355  Q
    || ||||   || |     |||||||||||||||||||| ||| |||||| |    |||||||||||||||||||| ||||||||||| |||||||||    
T  26089281 ctagtgatggcaatggtgtgaacatcacttcctccaattctactatttctac---tccaggaaatgctgggaaatctgttttgtcaggatatgaattc 26089375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 164 - 306
Target Start/End: Original strand, 14727714 - 14727856
Alignment:
Q  164 gagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgctg 263  Q
    |||||||| |||| |||||||||||| || |||||| |||| |||||||| || |||||||  |||||||||||||||||| |||||||| |||||||||    
T  14727714 gagcaacgcaacatttggttgatagtcgccactcttattgcaactgccatgtaccaatcagttttgagtccccctggtggagtttatcagattagtgctg 14727813  T
Q  264 gtgacactaacacgaacatcacttcctccaattttaccatttc 306  Q
    |||||| |||   |||||||||||||||||||| ||| |||||    
T  14727814 gtgacaataatttgaacatcacttcctccaattctactatttc 14727856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 130 - 269
Target Start/End: Original strand, 27714265 - 27714404
Alignment:
Q  130 ttatatagatcgcattacaagagacatattagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattg 229  Q
    ||||||| ||||||||| ||  ||  |||||||||||||||| ||||||||| |||||||||||||||||||||| || ||||| |||||||||| ||||    
T  27714265 ttatataaatcgcattagaaatgatgtattagaggagcaacgcaacacttggatgatagttgcgactcttgttgcaacagccatgtatcaatcagcattg 27714364  T
Q  230 agtccccctggtggaatttatcaggttagtgctggtgaca 269  Q
    | ||||  ||||||| |||||||||||| |||| ||||||    
T  27714365 actcccgttggtggagtttatcaggttaatgctagtgaca 27714404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 29552745 - 29552888
Alignment:
Q  164 gagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgctg 263  Q
    |||||||||||||||  ||||||||||||  | ||||||| |||||||| ||||||||||| | | ||||||||||||||| |||||||||||| ||||     
T  29552745 gagcaacgtaacactatgttgatagttgcagcccttgttgtgactgccacctatcaatcagtactaagtccccctggtggagtttatcaggttaatgcta 29552844  T
Q  264 gtgacactaacacgaacatcacttcctccaattttaccatttct 307  Q
    ||||||  ||   |||||||||||||||||||| ||| ||||||    
T  29552845 gtgacaaaaatttgaacatcacttcctccaattctactatttct 29552888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 163 - 307
Target Start/End: Original strand, 15329808 - 15329952
Alignment:
Q  163 ggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgct 262  Q
    |||| |||||||| |||||||  |||||||||||||| |||| ||| |||| ||  |||||    ||||||||||||||||| |||||||| ||||||||    
T  15329808 ggaggaacgtaacgcttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggtggagtttatcagattagtgct 15329907  T
Q  263 ggtgacactaacacgaacatcacttcctccaattttaccatttct 307  Q
    | ||||| |||   |||||||||||||||||||| ||| ||||||    
T  15329908 gatgacaataatttgaacatcacttcctccaattctactatttct 15329952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 163 - 307
Target Start/End: Original strand, 15510177 - 15510321
Alignment:
Q  163 ggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgct 262  Q
    |||| |||||||| |||||||  |||||||||||||| |||| ||| |||| ||  |||||    ||||||||||||||||| |||||||| ||||||||    
T  15510177 ggaggaacgtaacgcttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggtggagtttatcagattagtgct 15510276  T
Q  263 ggtgacactaacacgaacatcacttcctccaattttaccatttct 307  Q
    | ||||| |||   |||||||||||||||||||| ||| ||||||    
T  15510277 gatgacaataatttgaacatcacttcctccaattctactatttct 15510321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 163 - 307
Target Start/End: Original strand, 28865902 - 28866046
Alignment:
Q  163 ggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgct 262  Q
    |||| ||||||||||||||||  |||||||||||||| |||| ||| |||| |   |||||    ||||||||||||||||| |||||||| ||||| ||    
T  28865902 ggaggaacgtaacacttggttagtagttgcgactcttattgcaactaccatgttcgaatcaactctgagtccccctggtggattttatcagattagttct 28866001  T
Q  263 ggtgacactaacacgaacatcacttcctccaattttaccatttct 307  Q
    | ||||| |||   |||||||||||||||||||| ||| ||||||    
T  28866002 gatgacaataatttgaacatcacttcctccaattctactatttct 28866046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 160 - 291
Target Start/End: Complemental strand, 28693298 - 28693166
Alignment:
Q  160 agaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggtt-ag 258  Q
    |||||| ||||| |||| |||||| ||||| ||||||||| |||| ||| |||| | | ||||||   |||  ||||||||||||||||||||| || ||    
T  28693298 agaggatcaacgcaacatttggttaatagtcgcgactcttattgcaactaccatgtttgaatcagctctgacaccccctggtggaatttatcagatttag 28693199  T
Q  259 tgctggtgacactaacacgaacatcacttcctc 291  Q
    ||||||||||| |||   |||||||||||||||    
T  28693198 tgctggtgacagtaatttgaacatcacttcctc 28693166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 14727553 - 14727611
Alignment:
Q  12 cagagatcaagagtatattattaagtgttggagcaaaacctagcttggaagtcactgat 70  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| | |||||| |||||    
T  14727553 cagagatgaagagtatattattaagtgttggagcaaaacatagcatagaagtcgctgat 14727611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 26089061 - 26089111
Alignment:
Q  20 aagagtatattattaagtgttggagcaaaacctagcttggaagtcactgat 70  Q
    |||||||||||||||||| ||||||||||||||||| | ||| ||||||||    
T  26089061 aagagtatattattaagttttggagcaaaacctagcatagaaatcactgat 26089111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 24509272 - 24509369
Alignment:
Q  155 atattagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatca 252  Q
    ||||||||||||||||| | |||||||||||| |||||||| || ||||| || || | ||||||| ||| | | | ||||||||| ||| |||||||    
T  24509272 atattagaggagcaacgcagcacttggttgattgttgcgaccctcgttgcaacagcgacctatcaaacagtactaaatccccctggcggattttatca 24509369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 15329657 - 15329711
Alignment:
Q  12 cagagatcaagagtatattattaagtgttggagcaaaacctagcttggaagtcac 66  Q
    |||||||||||||||||||||| |||| |||  ||||||| ||||| ||||||||    
T  15329657 cagagatcaagagtatattattcagtgctgggtcaaaaccaagcttagaagtcac 15329711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 15510026 - 15510080
Alignment:
Q  12 cagagatcaagagtatattattaagtgttggagcaaaacctagcttggaagtcac 66  Q
    |||||||||||||||||||||| |||| |||  ||||||| ||||| ||||||||    
T  15510026 cagagatcaagagtatattattcagtgctgggtcaaaaccaagcttagaagtcac 15510080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 28865754 - 28865808
Alignment:
Q  12 cagagatcaagagtatattattaagtgttggagcaaaacctagcttggaagtcac 66  Q
    ||||||| |||||||||||||| |||| |||| ||||||| ||||| ||||||||    
T  28865754 cagagattaagagtatattattcagtgctggatcaaaaccaagcttagaagtcac 28865808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 31073849 - 31073808
Alignment:
Q  11 gcagagatcaagagtatattattaagtgttggagcaaaacct 52  Q
    |||||||||||| |||||||| |||||| |||||||||||||    
T  31073849 gcagagatcaagggtatattactaagtgctggagcaaaacct 31073808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 4e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 160 - 267
Target Start/End: Complemental strand, 6611017 - 6610910
Alignment:
Q  160 agaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagt 259  Q
    ||||||| | |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6611017 agaggagaaccgtaacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtcctcctggtggaatttatcaggttagt 6610918  T
Q  260 gctggtga 267  Q
    | ||||||    
T  6610917 gttggtga 6610910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 704 - 812
Target Start/End: Original strand, 6626931 - 6627038
Alignment:
Q  704 atgactgctaagatctctgtgactcaaaccacttatggccgaattcacaaccaataatatcgatctcaacgttgatttgtaattttacttgtcattgtta 803  Q
    |||||| || |||||||||  ||||||||||||  || ||||||||||||| || | ||| ||||||||  | ||||||||||||| |||||||||||||    
T  6626931 atgactactgagatctctgcaactcaaaccactgctg-ccgaattcacaacaaaaagtattgatctcaatatcgatttgtaattttccttgtcattgtta 6627029  T
Q  804 tctttgttt 812  Q
    |||||||||    
T  6627030 tctttgttt 6627038  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 165 - 307
Target Start/End: Complemental strand, 17292762 - 17292620
Alignment:
Q  165 agcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgctgg 264  Q
    ||||||| ||||||||||||||| |||||||||||||||| || |||| ||||||||||    | | ||||  ||||||  |||||||||||||| || |    
T  17292762 agcaacgcaacacttggttgataattgcgactcttgttgcaacagccacctatcaatcaacgctaactcccgttggtggtgtttatcaggttagtactag 17292663  T
Q  265 tgacactaacacgaacatcacttcctccaattttaccatttct 307  Q
    ||||| |||   ||||| |||||||| ||||| ||| ||||||    
T  17292662 tgacaataatgtgaacaacacttccttcaattctacaatttct 17292620  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 6611143 - 6611092
Alignment:
Q  16 gatcaagagtatattattaagtgttggagcaaaacctagcttggaagtcact 67  Q
    |||||||||||| ||||| || |||||||||||||||||||| |||||||||    
T  6611143 gatcaagagtatgttattcagagttggagcaaaacctagcttagaagtcact 6611092  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 487
Target Start/End: Complemental strand, 6610730 - 6610681
Alignment:
Q  438 gctttctagtgggttctccaatgggttggtttaccgctagttatttattt 487  Q
    |||||||||||| ||||||| |||||||||| | ||||||| ||||||||    
T  6610730 gctttctagtggcttctccagtgggttggttcagcgctagtcatttattt 6610681  T

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Target: chr3 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 155 - 307
Target Start/End: Original strand, 4819858 - 4820010
Alignment:
Q  155 atattagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcagg 254  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||| || |||||||| | ||  ||| || |||||| |||||||||    
T  4819858 atatcagaggagcaacgcaacacttggttgatagttgcgactcttgttgcaactgccacctttcaatcagcaatgtctccaccaggtggagtttatcagg 4819957  T
Q  255 ttagtgctggtgacactaacacgaacatcacttcctccaattttaccatttct 307  Q
    ||| |||| |||||| ||    ||||||||| ||| |||||| ||| ||||||    
T  4819958 ttaatgctagtgacagtagtttgaacatcacgtccaccaattctactatttct 4820010  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 4819716 - 4819769
Alignment:
Q  13 agagatcaagagtatattattaagtgttggagcaaaacctagcttggaagtcac 66  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  4819716 agagatcaagagtatattatcaagtgttggagcaaaacctggcttggaagtcac 4819769  T

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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 160 - 344
Target Start/End: Complemental strand, 26086548 - 26086364
Alignment:
Q  160 agaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagt 259  Q
    |||||||||||| |||| |||||| ||||| ||  ||||| |||||||| |||| ||| ||||||   ||| ||||||||||||| |||||| |  ||||    
T  26086548 agaggagcaacgcaacatttggttaatagtcgcagctcttattgcgactaccatgtatgaatcagctctgactccccctggtggagtttatccgagtagt 26086449  T
Q  260 gctggtgacactaacacgaacatcacttcctccaattttaccatttctgcccacccaggaaatgctgggaaatcagttttgtcag 344  Q
    || ||||||| ||    |||||||||||||||||||| ||| ||||||     || |||||||| ||||||||| || |||||||    
T  26086448 gccggtgacaatagtttgaacatcacttcctccaattctactatttctagtacccaaggaaatgttgggaaatctgtcttgtcag 26086364  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 26086693 - 26086638
Alignment:
Q  15 agatcaagagtatattattaagtgttggagcaaaacctagcttggaagtcactgat 70  Q
    |||||||||||||||||||||| |  ||||||||| ||||| |||||||| |||||    
T  26086693 agatcaagagtatattattaagggcaggagcaaaatctagcatggaagtcgctgat 26086638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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