View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14145_high_31 (Length: 308)

Name: NF14145_high_31
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14145_high_31
NF14145_high_31
[»] chr8 (3 HSPs)
chr8 (18-159)||(4950750-4950883)
chr8 (195-285)||(43465114-43465204)
chr8 (172-242)||(7931607-7931676)
[»] chr3 (6 HSPs)
chr3 (184-294)||(20286921-20287031)
chr3 (172-294)||(11512386-11512514)
chr3 (195-294)||(31342035-31342134)
chr3 (174-249)||(48342863-48342937)
chr3 (172-294)||(22893931-22894058)
chr3 (184-287)||(48342234-48342336)
[»] chr7 (7 HSPs)
chr7 (19-133)||(10485023-10485137)
chr7 (173-294)||(17272699-17272826)
chr7 (173-242)||(7211860-7211935)
chr7 (200-276)||(7211947-7212023)
chr7 (195-294)||(29681793-29681891)
chr7 (188-247)||(35418194-35418253)
chr7 (195-249)||(25099325-25099379)
[»] chr1 (10 HSPs)
chr1 (195-294)||(50754752-50754851)
chr1 (184-294)||(9884858-9884968)
chr1 (184-295)||(9379835-9379946)
chr1 (172-294)||(28739344-28739472)
chr1 (195-294)||(15928104-15928204)
chr1 (190-287)||(6539597-6539694)
chr1 (200-294)||(28045351-28045446)
chr1 (172-220)||(44382439-44382486)
chr1 (172-228)||(4579168-4579229)
chr1 (180-220)||(19919665-19919704)
[»] scaffold0010 (1 HSPs)
scaffold0010 (21-133)||(224005-224109)
[»] chr2 (4 HSPs)
chr2 (184-294)||(39819080-39819190)
chr2 (186-294)||(12918552-12918660)
chr2 (171-294)||(7755334-7755463)
chr2 (191-294)||(15562228-15562331)
[»] chr4 (8 HSPs)
chr4 (184-294)||(31846822-31846932)
chr4 (195-294)||(6607426-6607525)
chr4 (195-294)||(31012155-31012254)
chr4 (195-294)||(6608377-6608476)
chr4 (178-220)||(25818384-25818426)
chr4 (184-229)||(2254553-2254598)
chr4 (200-237)||(38324920-38324957)
chr4 (186-247)||(43063537-43063598)
[»] chr5 (8 HSPs)
chr5 (184-292)||(29385318-29385426)
chr5 (184-247)||(1839988-1840051)
chr5 (184-294)||(19417462-19417571)
chr5 (200-294)||(36568737-36568831)
chr5 (200-287)||(9177883-9177970)
chr5 (191-294)||(5215600-5215704)
chr5 (195-248)||(23219359-23219412)
chr5 (258-294)||(25879340-25879376)
[»] chr6 (3 HSPs)
chr6 (195-294)||(2543775-2543873)
chr6 (200-294)||(11448090-11448184)
chr6 (205-233)||(178672-178700)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 4950883 - 4950750
Alignment:
Q  18 caaccattgatgtgaccataatttaacaaagtgacaatgaagtgcatcagcaatacccaatagagtattccacacttttcaatttgtcaaacttttgaat 117  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4950883 caaccattgatgtgaccttaatttaaaaaagtgacaat-aagtgcatcagcaatacccaatagagtattccacacttttcaatttgtcaaacttttgaat 4950785  T
Q  118 ttccttttggtggtgtcaggtgtgtgtgatctaaaaattcac 159  Q
    ||||||||||       |||||||||||||||||||||||||    
T  4950784 ttccttttgg-------aggtgtgtgtgatctaaaaattcac 4950750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 43465114 - 43465204
Alignment:
Q  195 tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtggt 285  Q
    |||| ||||||||||||||| |||||||||||||||||| |||| ||| |||| |       |||||||||||||||||||||||||||||    
T  43465114 tgacattggccaaccacaatatcacatgtggctttcttctttttttttcacaagatttttttgttgttttgcacacttgtaacattgtggt 43465204  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 7931676 - 7931607
Alignment:
Q  172 gggtagcacttgggtgacattgatgacgttggccaaccacaatgtcacatgtggctttcttccttttcttt 242  Q
    ||||| |||||||||||||||| |||| ||||| |||||||||||||||  || |||||||| || |||||    
T  7931676 gggtaacacttgggtgacattg-tgacattggcaaaccacaatgtcacaaatgtctttcttctttctcttt 7931607  T

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Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 184 - 294
Target Start/End: Original strand, 20286921 - 20287031
Alignment:
Q  184 ggtgacattgatgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtg 283  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |       |||||||||||||||||||||||||||    
T  20286921 ggtgacattgatgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagacttttttgttgttttgcacacttgtaacattgtg 20287020  T
Q  284 gttgataatgt 294  Q
    |||| ||||||    
T  20287021 gttggtaatgt 20287031  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 172 - 294
Target Start/End: Original strand, 11512386 - 11512514
Alignment:
Q  172 gggtagcacttgggtgacattga------tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttg 265  Q
    ||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||||| |||||||| |||| |       | |||||||    
T  11512386 gggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgatgttttg 11512485  T
Q  266 cacacttgtaacattgtggttgataatgt 294  Q
    |||||||||||||||||||||| ||||||    
T  11512486 cacacttgtaacattgtggttggtaatgt 11512514  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 294
Target Start/End: Original strand, 31342035 - 31342134
Alignment:
Q  195 tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtggttgataatgt 294  Q
    |||| |||||||||||||||||||||||| ||||||||| |||||||| |||| |       ||||||||||||||||||||||||||||||| ||||||    
T  31342035 tgacattggccaaccacaatgtcacatgtagctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggtaatgt 31342134  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 48342937 - 48342863
Alignment:
Q  174 gtagcacttgggtgacattgatgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaata 249  Q
    |||||||||||||||||||| |||| || |||||| ||||||||||||||| |||||||| || ||||||||||||    
T  48342937 gtagcacttgggtgacattg-tgacattagccaacgacaatgtcacatgtgtctttcttcattctcttttacaata 48342863  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 22894058 - 22893931
Alignment:
Q  172 gggtagcacttgggtgacattga------tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttg 265  Q
    ||||||||||||||||||||||       |||| ||| ||||||||||||||||| ||| |||||||| |||||||| |||| |       |||||||||    
T  22894058 gggtagcacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgactttcttctttttctttaacaagatttttt-gttgttttg 22893960  T
Q  266 cacacttgtaacattgtggttgataatgt 294  Q
     ||||||||||||||||||||| ||||||    
T  22893959 tacacttgtaacattgtggttggtaatgt 22893931  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 287
Target Start/End: Original strand, 48342234 - 48342336
Alignment:
Q  184 ggtgacattgatgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtg 283  Q
    |||||||||| |||| || ||||||||||||| |||||||| |||||||| || ||||||||||||       ||| ||||| ||| |||| ||||||||    
T  48342234 ggtgacattg-tgacattagccaaccacaatgccacatgtgtctttcttcattctcttttacaatatttttttgtttttttgtacatttgtgacattgtg 48342332  T
Q  284 gttg 287  Q
    ||||    
T  48342333 gttg 48342336  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 10485023 - 10485137
Alignment:
Q  19 aaccattgatgtgaccataatttaacaaagtgacaatgaagtgcatcagcaatacccaatagagtattccacacttttcaatttgtcaaacttttgaatt 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | | ||| |||||||||||||  | |||||||||||| |||||    
T  10485023 aaccattgatgtgatcataatttaacaaagtgacaatgaagtgcattagcaataccaagttgagcattccacacttttttaattgtcaaactttcgaatt 10485122  T
Q  119 tccttttggtggtgt 133  Q
    ||||||||| |||||    
T  10485123 tccttttggaggtgt 10485137  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 173 - 294
Target Start/End: Original strand, 17272699 - 17272826
Alignment:
Q  173 ggtagcacttgggtgacattga------tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgc 266  Q
    |||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||||| |||||||| |||| |       ||||||||||    
T  17272699 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgc 17272798  T
Q  267 acacttgtaacattgtggttgataatgt 294  Q
    ||||||||||||||||||||| ||||||    
T  17272799 acacttgtaacattgtggttggtaatgt 17272826  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 7211860 - 7211935
Alignment:
Q  173 ggtagcacttgggtgacattga------tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttt 242  Q
    |||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||||| ||||||||    
T  7211860 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttcttt 7211935  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 276
Target Start/End: Complemental strand, 7212023 - 7211947
Alignment:
Q  200 ttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaa 276  Q
    ||||||||||||||||||||||||| |||||||| |||||||| |||| |       ||||||||||||||||||||    
T  7212023 ttggccaaccacaatgtcacatgtgactttcttctttttctttcacaagatttttttgttgttttgcacacttgtaa 7211947  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 294
Target Start/End: Original strand, 29681793 - 29681891
Alignment:
Q  195 tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtggttgataatgt 294  Q
    |||| |||||||||||||| ||||||||||||||| ||  |||| |||||||| |       |||||||| |||||||||||||||||||||| ||||||    
T  29681793 tgacattggccaaccacaacgtcacatgtggctttttttttttt-ttttacaagatatttttgttgttttacacacttgtaacattgtggttggtaatgt 29681891  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 35418194 - 35418253
Alignment:
Q  188 acattgatgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaa 247  Q
    ||||||||||| |||| |||||||||| ||||||||| |||||| | |||||||||||||    
T  35418194 acattgatgacattggtcaaccacaatatcacatgtgactttctcctttttcttttacaa 35418253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 25099379 - 25099325
Alignment:
Q  195 tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaata 249  Q
    |||| |||| |||||||||||||||| ||| |||||||| |||||||| ||||||    
T  25099379 tgactttggtcaaccacaatgtcacaagtgtctttcttctttttctttcacaata 25099325  T

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Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 195 - 294
Target Start/End: Original strand, 50754752 - 50754851
Alignment:
Q  195 tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtggttgataatgt 294  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||| |       ||||||||||||||||||||||||||||||||||||||    
T  50754752 tgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagatttttttgttgttttgcacacttgtaacattgtggttgataatgt 50754851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 184 - 294
Target Start/End: Original strand, 9884858 - 9884968
Alignment:
Q  184 ggtgacattgatgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtg 283  Q
    |||||||||| |||| |||| ||||||||||||||||||||||||||||| |||||||| |||| |       |||||||||||||||||||||||||||    
T  9884858 ggtgacattggtgacattggtcaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtg 9884957  T
Q  284 gttgataatgt 294  Q
    |||||||||||    
T  9884958 gttgataatgt 9884968  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 184 - 295
Target Start/End: Original strand, 9379835 - 9379946
Alignment:
Q  184 ggtgacattgatgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtg 283  Q
    |||||||||| |||  |||||||||||||||||||||||||||||||||| |||||||| |||| |       |||||||||||||||||||||||||||    
T  9379835 ggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtg 9379934  T
Q  284 gttgataatgtt 295  Q
    |||| |||||||    
T  9379935 gttggtaatgtt 9379946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 28739472 - 28739344
Alignment:
Q  172 gggtagcacttgggtgacattga------tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttg 265  Q
    ||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||| ||| ||||||||||||| |       ||| |||||    
T  28739472 gggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttttttctttttcttttacaagatttttttgttattttg 28739373  T
Q  266 cacacttgtaacattgtggttgataatgt 294  Q
    |||||||||||||||||||||| ||||||    
T  28739372 cacacttgtaacattgtggttggtaatgt 28739344  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 195 - 294
Target Start/End: Complemental strand, 15928204 - 15928104
Alignment:
Q  195 tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaata-nnnnnnngttgttttgcacacttgtaacattgtggttgataatg 293  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||| |||| |        ||||||||| |||||||||||||||||||||||||||    
T  15928204 tgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttgttgttgttttgtacacttgtaacattgtggttgataatg 15928105  T
Q  294 t 294  Q
    |    
T  15928104 t 15928104  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 6539694 - 6539597
Alignment:
Q  190 attgatgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtggttg 287  Q
    |||| |||| |||| |||||||||||||||||||| |||||||| |||||||| |||| |       |||||||||||||||||||||||||||||||    
T  6539694 attggtgacattggtcaaccacaatgtcacatgtgactttcttctttttctttcacaagacttttttgttgttttgcacacttgtaacattgtggttg 6539597  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 28045351 - 28045446
Alignment:
Q  200 ttggccaaccacaatgtcacatgtggctttcttccttttcttttacaata-nnnnnnngttgttttgcacacttgtaacattgtggttgataatgt 294  Q
    ||||||||||| ||||||||| |||||||||||| |||||||| |||| |         |||||||| ||||||||||||||||||||| ||||||    
T  28045351 ttggccaaccataatgtcacaagtggctttcttctttttctttaacaagattttcttttttgttttgtacacttgtaacattgtggttggtaatgt 28045446  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 44382486 - 44382439
Alignment:
Q  172 gggtagcacttgggtgacattgatgacgttggccaaccacaatgtcaca 220  Q
    |||||||||||||||||||||| |||| ||||||||||||||| |||||    
T  44382486 gggtagcacttgggtgacattg-tgacattggccaaccacaatatcaca 44382439  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 4579168 - 4579229
Alignment:
Q  172 gggtagcacttgggtgacattga-----tgacgttggccaaccacaatgtcacatgtggctt 228  Q
    |||||||||||||||||||| ||     |||| ||||||||||||||||||||| |||||||    
T  4579168 gggtagcacttgggtgacatagaattggtgacattggccaaccacaatgtcacaagtggctt 4579229  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 19919665 - 19919704
Alignment:
Q  180 cttgggtgacattgatgacgttggccaaccacaatgtcaca 220  Q
    |||| ||||||||| ||||||||||||||||||||||||||    
T  19919665 cttgagtgacattg-tgacgttggccaaccacaatgtcaca 19919704  T

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Target: scaffold0010 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 224005 - 224109
Alignment:
Q  21 ccattgatgtgaccataatttaacaaagtgacaatgaagtgcatcagcaatacccaatagagtattccacacttttcaatttgtcaaacttttgaatttc 120  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||        |||||||||||| ||| ||||||||||||||||||||    
T  224005 ccattgatgtgaccataatttaacaaagtgaaaatgaagtgcatcagcaatcccc--------attccacactttccaaattgtcaaacttttgaatttc 224096  T
Q  121 cttttggtggtgt 133  Q
    ||||||| |||||    
T  224097 cttttggaggtgt 224109  T

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Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 184 - 294
Target Start/End: Original strand, 39819080 - 39819190
Alignment:
Q  184 ggtgacattgatgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtg 283  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| |||| |       |||||||||||||||||||| ||||||    
T  39819080 ggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaatattgtg 39819179  T
Q  284 gttgataatgt 294  Q
    |||| ||||||    
T  39819180 gttggtaatgt 39819190  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 186 - 294
Target Start/End: Original strand, 12918552 - 12918660
Alignment:
Q  186 tgacattgatgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtggt 285  Q
    |||||||| |||| |||||||||||||||||||||||||||||| ||| |||||||| | || |       ||||||||||||| |||||||||||||||    
T  12918552 tgacattggtgacattggccaaccacaatgtcacatgtggcttttttctttttctttcataagacttttttgttgttttgcacatttgtaacattgtggt 12918651  T
Q  286 tgataatgt 294  Q
    || ||||||    
T  12918652 tggtaatgt 12918660  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 7755334 - 7755463
Alignment:
Q  171 cgggtagcacttgggtgacattga------tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgtttt 264  Q
    |||||||||||||||||||||||       |||| ||||||||||||||||||||| |||||||| ||| |||||||| |||| |       ||||||||    
T  7755334 cgggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacaagtggcttttttctttttctttaacaagatttttttgttgtttt 7755433  T
Q  265 gcacacttgtaacattgtggttgataatgt 294  Q
    | ||||||||||||||||| ||| ||||||    
T  7755434 gtacacttgtaacattgtgattggtaatgt 7755463  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 15562228 - 15562331
Alignment:
Q  191 ttgatgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtggttgata 290  Q
    |||||||| ||||||||||||||||||||||||| |||||||| ||||  || ||   |       ||||||||||||||||||||||||||| ||| ||    
T  15562228 ttgatgacattggccaaccacaatgtcacatgtgactttcttcttttttattcactggatttttttgttgttttgcacacttgtaacattgtgattggta 15562327  T
Q  291 atgt 294  Q
    ||||    
T  15562328 atgt 15562331  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 184 - 294
Target Start/End: Complemental strand, 31846932 - 31846822
Alignment:
Q  184 ggtgacattgatgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtg 283  Q
    |||||||||| |||  |||||||||||||||||||||||||||||||||| |||||||| |||| |       |||||||||||||||||||||||| ||    
T  31846932 ggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattttg 31846833  T
Q  284 gttgataatgt 294  Q
    |||| ||||||    
T  31846832 gttggtaatgt 31846822  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 195 - 294
Target Start/End: Complemental strand, 6607525 - 6607426
Alignment:
Q  195 tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtggttgataatgt 294  Q
    |||| ||| ||||||| |||||||||||||||||||||| |||||||| |||| |       ||||||||||||||||||||||||||||||| ||||||    
T  6607525 tgacattgaccaaccataatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggtaatgt 6607426  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 294
Target Start/End: Original strand, 31012155 - 31012254
Alignment:
Q  195 tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtggttgataatgt 294  Q
    |||| ||| ||||||||||||||||||||| |||| ||| |||||||| |||||        ||||||||||| |||||||| |||||||||| ||||||    
T  31012155 tgacattgaccaaccacaatgtcacatgtgacttttttctttttctttcacaatttttttttgttgttttgcatacttgtaatattgtggttggtaatgt 31012254  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 294
Target Start/End: Original strand, 6608377 - 6608476
Alignment:
Q  195 tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtggttgataatgt 294  Q
    |||| ||||||||||| ||||||||| ||||||| |||| |||||||| | |          ||||||||||| ||||||||||||||||||| ||||||    
T  6608377 tgacattggccaaccataatgtcacacgtggcttccttctttttctttcaaagattctttttgttgttttgcagacttgtaacattgtggttggtaatgt 6608476  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 25818384 - 25818426
Alignment:
Q  178 cacttgggtgacattgatgacgttggccaaccacaatgtcaca 220  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||    
T  25818384 cacttgggtgacattgatgacattggtcaatcacaatgtcaca 25818426  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 2254553 - 2254598
Alignment:
Q  184 ggtgacattgatgacgttggccaaccacaatgtcacatgtggcttt 229  Q
    ||||| ||||||||| ||| ||||||||||||||||||||| ||||    
T  2254553 ggtgatattgatgacattgaccaaccacaatgtcacatgtgacttt 2254598  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 38324957 - 38324920
Alignment:
Q  200 ttggccaaccacaatgtcacatgtggctttcttccttt 237  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  38324957 ttggccaaccataatatcacatgtggctttcttccttt 38324920  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 43063537 - 43063598
Alignment:
Q  186 tgacattgatgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaa 247  Q
    |||||||| |||| || |||||||||||||||||| ||||||||| ||  ||||||| ||||    
T  43063537 tgacattggtgacattagccaaccacaatgtcacaagtggctttcatcactttctttcacaa 43063598  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 292
Target Start/End: Complemental strand, 29385426 - 29385318
Alignment:
Q  184 ggtgacattgatgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtg 283  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||  | | |       |||||||||||||||||||||||||||    
T  29385426 ggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcgctagatttttttgttgttttgcacacttgtaacattgtg 29385327  T
Q  284 gttgataat 292  Q
    |||| ||||    
T  29385326 gttggtaat 29385318  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 1839988 - 1840051
Alignment:
Q  184 ggtgacattgatgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaa 247  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  1839988 ggtgacattgatgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaa 1840051  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 294
Target Start/End: Original strand, 19417462 - 19417571
Alignment:
Q  184 ggtgacattgatgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtg 283  Q
    |||||||||| |||| |||| |||| ||||||||||||||| ||||||| ||||||||| |||| |       ||||||||||||||||| |||||||||    
T  19417462 ggtgacattggtgacattggtcaactacaatgtcacatgtgactttctttcttttctttcacaagatttttttgttgttttgcacacttg-aacattgtg 19417560  T
Q  284 gttgataatgt 294  Q
    |||| ||||||    
T  19417561 gttggtaatgt 19417571  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 36568737 - 36568831
Alignment:
Q  200 ttggccaaccacaa-tgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtggttgataatgt 294  Q
    |||| ||||||||| ||||||||||||||||||||||||||||| ||||||       ||||||||| ||||||||||||||||||||||| ||||    
T  36568737 ttggtcaaccacaaatgtcacatgtggctttcttccttttctttcacaata-ttttttgttgttttgtacacttgtaacattgtggttgattatgt 36568831  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 9177970 - 9177883
Alignment:
Q  200 ttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtggttg 287  Q
    ||||||||||||||| ||||||||| |||||||| |||||||| ||||||        ||||||||||||||| ||||||||||||||    
T  9177970 ttggccaaccacaatatcacatgtgactttcttctttttctttcacaatatttttttattgttttgcacacttataacattgtggttg 9177883  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 5215704 - 5215600
Alignment:
Q  191 ttgatgacgttggccaaccacaatgtcacatgtggcttt-cttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtggttgat 289  Q
    |||||||| |||| |||||||||| |||||||||||||| |||  |||||||| |||| |       ||||||||| ||||||||||||||||||||| |    
T  5215704 ttgatgacattggtcaaccacaatatcacatgtggcttttcttatttttctttcacaagattttgttgttgttttgtacacttgtaacattgtggttggt 5215605  T
Q  290 aatgt 294  Q
    |||||    
T  5215604 aatgt 5215600  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 23219412 - 23219359
Alignment:
Q  195 tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaat 248  Q
    |||| ||||||||||||||||||| || || |||||||| |||||||| |||||    
T  23219412 tgaccttggccaaccacaatgtcatatatgactttcttctttttctttcacaat 23219359  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 25879376 - 25879340
Alignment:
Q  258 ttgttttgcacacttgtaacattgtggttgataatgt 294  Q
    |||||||  ||||||||||||||||||||||||||||    
T  25879376 ttgttttatacacttgtaacattgtggttgataatgt 25879340  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 294
Target Start/End: Complemental strand, 2543873 - 2543775
Alignment:
Q  195 tgacgttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtggttgataatgt 294  Q
    |||| |||||||||||||||||||||||||||||| ||  |||||||| |||| |       |||||||| |||||||||||||||||||||| ||||||    
T  2543873 tgacattggccaaccacaatgtcacatgtggcttttttttttttctttcacaa-atttttttgttgttttacacacttgtaacattgtggttggtaatgt 2543775  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 11448090 - 11448184
Alignment:
Q  200 ttggccaaccacaatgtcacatgtggctttcttccttttcttttacaatannnnnnngttgttttgcacacttgtaacattgtggttgataatgt 294  Q
    ||||||||||||||||| | |||| ||||| ||| |||||||| ||||         |||||||||||||||| |||||||||||||| ||||||    
T  11448090 ttggccaaccacaatgttatatgtagcttttttctttttctttcacaaattttttttgttgttttgcacacttataacattgtggttggtaatgt 11448184  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 178672 - 178700
Alignment:
Q  205 caaccacaatgtcacatgtggctttcttc 233  Q
    |||||||||||||||||||||||||||||    
T  178672 caaccacaatgtcacatgtggctttcttc 178700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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