View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14145_high_35 (Length: 288)
Name: NF14145_high_35
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_high_35 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 14 - 288
Target Start/End: Complemental strand, 5351389 - 5351115
Alignment:
| Q |
14 |
catcaagtagagtttctgacagaagttgataaaattctggtaacattttctggatatgttggtaaatagcattttttatttatttaaataaataagaaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5351389 |
catcaagtagagtttctgacagaagttgataaaattctggtaacattttctgaatatgttgataaatagcattttttatttatttaaataaataagaaaa |
5351290 |
T |
|
| Q |
114 |
catatataactttgctttttataggttatggagggtggagttattaaccaagcaggaagccatgaggaattgtcgacatctggaacaacctttgaacaac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5351289 |
catatataactttgctttttataggttatggagggtggagttattaatcaagcaggaagccatgaggaattgtcgacatctggaacaacctttgaacaac |
5351190 |
T |
|
| Q |
214 |
ttatgaatgctcatagagatgcaatatctgtaataggtactacaagtagtcaaaacaaaggaaaaagtcaagaaa |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5351189 |
ttatgaatgctcatagagatgcaatatctgtaataggtactacaagtagtcaaaacaaaggaaaaagtcaagaaa |
5351115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University