View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14145_high_4 (Length: 639)
Name: NF14145_high_4
Description: NF14145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14145_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 25 - 620
Target Start/End: Original strand, 41038858 - 41039448
Alignment:
| Q |
25 |
atgcatgacgtgattaaagaaaatcattcacatgatctaacataataacttaatttttattgtttttcatcgaggttaatagtttttattaaatctttac |
124 |
Q |
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| T |
41038858 |
atgcatgacgtgattaaagaaaatcattcacgtgatctaacataataacttaatttttattgtttttcatcgaggttaatagtttttattaaatctttac |
41038957 |
T |
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| Q |
125 |
catatgtagaggtatgctttgttataatcgaaaattattatctgtaaccnnnnnnngtaatcgaaagttattatcacaaaaaatatatagcatttttgac |
224 |
Q |
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| T |
41038958 |
cat--gtagaggtatgctttgttataatcgaaagttattatctgtaaccaaaaaaagtaatcgaaagttattatcacaaaaaatatatagcagttttgac |
41039055 |
T |
|
| Q |
225 |
atctttatccataatcattatcataatcataacctctaggcaggtgaatgagtgtatgccataacatacatacaagatttataaaccccatttacatgac |
324 |
Q |
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| T |
41039056 |
atctttatccataatcattatcataatcataacctctaggcaggtgaatgagtgtatgccataacatact----agatttataaaccccatttacatgac |
41039151 |
T |
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| Q |
325 |
attagcttatattttgtgcaataacaatgcacgtttttattggatatttagctattcatcatttgttcataaataaacaa-gacaattgaatcataaata |
423 |
Q |
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| T |
41039152 |
attagcttatattttgtgcaataacaatgcacgtttttattggatatttagctattcatcatttgttcataaataaacaaagacaattgaatcataaata |
41039251 |
T |
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| Q |
424 |
tctaaccaaagacaagaaaagtaaactacaataaaatagatggtacgttggcaagccatccatcattatttatgaaagatgacaaagtatattcattcaa |
523 |
Q |
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| T |
41039252 |
tctaaccaaagacaagaaaagtaaactacaataaaatagatggtacgttggcaagccatccatcattatttatgaaagatgacaaagtatattcattcaa |
41039351 |
T |
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| Q |
524 |
gtttaagctatctggtttcttttcccacttgacacgtttctcaacgttggccccaggtcctgtacaattaacttctgcatatgtgaggttttgcctg |
620 |
Q |
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| T |
41039352 |
gtttaagctatctggtttcttttcccacttgacacgtttctcaatgttggccccaggtcctgtacaattaacttctgcatatgtgaggttttgcctg |
41039448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 517
Target Start/End: Complemental strand, 18745566 - 18745523
Alignment:
| Q |
474 |
gcaagccatccatcattatttatgaaagatgacaaagtatattc |
517 |
Q |
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| T |
18745566 |
gcaagccatccatctttatttatgaaagatgataaagaatattc |
18745523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 520
Target Start/End: Original strand, 54497759 - 54497809
Alignment:
| Q |
470 |
gttggcaagccatccatcattatttatgaaagatgacaaagtatattcatt |
520 |
Q |
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| T |
54497759 |
gttggtaagccatccattcttatttatgaaagatgataaagaatattcatt |
54497809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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